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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039084 through 18771 annotations produced 1 hits



(CG10175):

Annotation Number : CG10175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039084
Gbrowse : chr3R:19348422-19356704 (-) // 100.0 //
Probeset : 1624700_a_at
Accessions : protein= NP_651151; /// NP_732874; /// NP_732875;, nucleotide= NM_142894; /// NM_170077; /// NM_170078;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0039084.
BDGP gene expression has embryonic in situ data for CG10175: 13 pix of staining in 9 body parts.
Homophila reports that CG10175 is a close match (3e-19) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
BioGrid reports that CG10175 interacts with CG11678 .
VDRC has 2 RNAi stocks for FBgn0039084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.10Down
Head217 ± 164 of 4 4.10Up
Eye10 ± 02 of 4 0.20Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.10Down
Salivary gland210 ± 134 of 4 3.97Up
Crop50 ± 34 of 4 0.90None
Midgut24 ± 43 of 4 0.50Down
Tubule18 ± 13 of 4 0.40Down
Hindgut50 ± 34 of 4 0.90None
Heart7 ± 11 of 4 0.15Down
Fat body4 ± 20 of 4 0.08Down
Ovary10 ± 04 of 4 0.20Down
Testis430 ± 284 of 4 8.10Up
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca39 ± 24 of 4 0.74None
Mated spermatheca52 ± 74 of 4 0.99None
Adult carcass56 ± 54 of 4 1.10None
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland132 ± 84 of 4 2.51Up
Larval midgut55 ± 14 of 4 1.04None
Larval tubule6 ± 00 of 4 0.10Down
Larval hindgut97 ± 234 of 4 1.85None
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea14 ± 34 of 4 0.28Down
Larval carcass21 ± 24 of 4 0.41Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly52 ± 54 of 4

Looking for FBgn0039084. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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