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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039085 through 18771 annotations produced 1 hits



(CG10170):

Annotation Number : CG10170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039085
Gbrowse : chr3R:19358766-19360445 (-) // 100.0 //
Probeset : 1641664_at
Accessions : protein= NP_651152;, nucleotide= NM_142895;
Interpro : "0003851 // 2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity // inferred from sequence or structural simil
FlyMine data for FBgn0039085.
BDGP gene expression has embryonic in situ data for CG10170: 14 pix of staining in 2 body parts.
Homophila reports that CG10170 is a close match (8e-33) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 2 RNAi stocks for FBgn0039085 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.10Down
Head4 00 of 4 0.10Down
Eye3 00 of 4 0.07Down
Thoracicoabdominal ganglion3 11 of 4 0.10Down
Salivary gland14 11 of 4 0.28Down
Crop5 02 of 4 0.10Down
Midgut643 224 of 413.10Up
Tubule796 1004 of 416.20Up
Hindgut178 74 of 4 3.60Up
Heart3 11 of 4 0.07Down
Fat body11 24 of 4 0.24Down
Ovary0 00 of 4 0.00Down
Testis8 12 of 4 0.20Down
Male accessory glands7 11 of 4 0.20Down
Virgin spermatheca5 00 of 4 0.11Down
Mated spermatheca6 02 of 4 0.14Down
Adult carcass9 31 of 4 0.20Down
Larval CNS4 14 of 4 0.10Down
Larval Salivary gland5 11 of 4 0.12Down
Larval midgut323 84 of 4 6.58Up
Larval tubule182 94 of 4 3.70Up
Larval hindgut107 64 of 4 2.19Up
Larval fat body6 21 of 4 0.10Down
Larval trachea2 10 of 4 0.06Down
Larval carcass4 11 of 4 0.10Down
S2 cells (growing)4 03 of 4 0.08Down
Whole fly49 64 of 4

Looking for FBgn0039085. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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