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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039088 through 18771 annotations produced 1 hits


(CG10164):

Annotation Number : CG10164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039088
Gbrowse : chr3R:19380218-19382497 (-) // 100.0 //
Probeset : 1634830_at
Accessions : protein= NP_001163701; /// NP_651155;, nucleotide= NM_001170230; /// NM_142898;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039088.
BioGrid reports that CG10164 interacts with CG1163 CG12470 CG4270 CG5000 CG7488 CG14622 CG5408 CG5930 CG6673 CG6805 CG8120 CG9331 CG9776 CG9797 .
TRiP has 1 RNAi stocks for FBgn0039088 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland12 ± 40 of 4 0.09Down
Crop4 ± 10 of 4 0.00Down
Midgut4 ± 00 of 4 0.00Down
Tubule3 ± 10 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body1 ± 00 of 4 0.01Down
Ovary1 ± 10 of 4 0.00Down
Testis1448 ± 204 of 411.00Up
Male accessory glands8 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 10 of 4 0.01Down
Mated spermatheca3 ± 00 of 4 0.03Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS3 ± 20 of 4 0.03Down
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut3 ± 10 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body142 ± 804 of 4 1.10None
Larval trachea3 ± 41 of 4 0.03Down
Larval carcass3 ± 00 of 4 0.02Down
S2 cells (growing)5 ± 11 of 4 0.04Down
Whole fly132 ± 84 of 4

Looking for FBgn0039088. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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