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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039089 through 18771 annotations produced 1 hits

beat-IV (beat-IV):

Annotation Number : CG10152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039089
Gbrowse : chr3R:19383162-19405281 (+) // 99.82 //
Probeset : 1634725_at
Accessions : protein= NP_651156;, nucleotide= NM_142899;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0039089.
VDRC has 5 RNAi stocks for FBgn0039089 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain389 294 of 423.50Up
Head85 84 of 4 5.20Up
Eye85 74 of 4 5.14Up
Thoracicoabdominal ganglion362 124 of 421.90Up
Salivary gland14 41 of 4 0.87None
Crop6 20 of 4 0.40Down
Midgut3 00 of 4 0.20Down
Tubule5 00 of 4 0.30Down
Hindgut4 10 of 4 0.30Down
Heart3 00 of 4 0.20Down
Fat body24 130 of 4 1.46None
Ovary1 00 of 4 0.10Down
Testis3 10 of 4 0.20Down
Male accessory glands4 20 of 4 0.30Down
Virgin spermatheca16 00 of 4 1.00None
Mated spermatheca16 50 of 4 1.00None
Adult carcass9 30 of 4 0.60None
Larval CNS166 254 of 410.04Up
Larval Salivary gland6 20 of 4 0.40Down
Larval midgut4 10 of 4 0.27Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut7 30 of 4 0.43None
Larval fat body2 00 of 4 0.10Down
Larval trachea7 30 of 4 0.43Down
Larval carcass6 10 of 4 0.40Down
S2 cells (growing)1 00 of 4 0.08Down
Whole fly16 02 of 4

Looking for FBgn0039089. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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