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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039092 through 18771 annotations produced 2 hits



(CG16723):

Annotation Number : CG16723
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039092
Gbrowse : chr3R:19419618-19420361 (-) // 100.0 //
Probeset : 1626100_at
Accessions : protein= NP_651159;, nucleotide= NM_142902;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0039092.
BioGrid reports that CG16723 interacts with CG3880 .
VDRC has 2 RNAi stocks for FBgn0039092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head2 ± 00 of 4 0.80None
Eye1 ± 00 of 4 0.75None
Thoracicoabdominal ganglion3 ± 10 of 4 1.40None
Salivary gland5 ± 10 of 4 2.32None
Crop1 ± 00 of 4 0.70None
Midgut26 ± 14 of 411.30Up
Tubule2 ± 00 of 4 1.20None
Hindgut2 ± 10 of 4 1.20None
Heart0 ± 00 of 4 0.32None
Fat body3 ± 30 of 4 1.34None
Ovary0 ± 00 of 4 0.30None
Testis0 ± 00 of 4 0.30None
Male accessory glands3 ± 10 of 4 1.30None
Virgin spermatheca0 ± 00 of 4 0.22None
Mated spermatheca2 ± 00 of 4 1.24None
Adult carcass5 ± 20 of 4 2.20None
Larval CNS1 ± 20 of 4 0.85None
Larval Salivary gland2 ± 10 of 4 0.95None
Larval midgut33 ± 34 of 414.19Up
Larval tubule0 ± 00 of 4 0.40None
Larval hindgut2 ± 00 of 4 1.04None
Larval fat body2 ± 11 of 4 0.80None
Larval trachea0 ± 00 of 4 0.16None
Larval carcass2 ± 00 of 4 0.97None
S2 cells (growing)1 ± 10 of 4 0.55None
Whole fly2 ± 00 of 4



(CG16723):

Annotation Number : CG10183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039092
Gbrowse : chr3R:19421419-19424756 (-) // 100.0 //
Probeset : 1623642_at
Accessions : protein= NP_651159;, nucleotide= NM_142902;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0039092.
VDRC has 2 RNAi stocks for FBgn0039092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 2.40None
Head5 ± 10 of 4 5.90None
Eye2 ± 00 of 4 2.44None
Thoracicoabdominal ganglion2 ± 10 of 4 3.10None
Salivary gland5 ± 40 of 4 6.94None
Crop2 ± 10 of 4 2.30None
Midgut12 ± 20 of 414.70Up
Tubule2 ± 00 of 4 2.40Up
Hindgut4 ± 10 of 4 5.60None
Heart3 ± 10 of 4 4.06None
Fat body1 ± 10 of 4 1.53None
Ovary1 ± 00 of 4 1.30None
Testis0 ± 00 of 4 0.90None
Male accessory glands2 ± 00 of 4 3.30None
Virgin spermatheca3 ± 10 of 4 4.03None
Mated spermatheca3 ± 00 of 4 4.44Up
Adult carcass8 ± 20 of 410.10None
Larval CNS1 ± 10 of 4 1.56None
Larval Salivary gland1 ± 00 of 4 1.32None
Larval midgut13 ± 20 of 415.32Up
Larval tubule0 ± 00 of 4 0.90None
Larval hindgut1 ± 00 of 4 2.21None
Larval fat body4 ± 10 of 4 4.70None
Larval trachea1 ± 20 of 4 1.91None
Larval carcass1 ± 00 of 4 1.35None
S2 cells (growing)0 ± 00 of 4 1.03None
Whole fly0 ± 00 of 4

Looking for FBgn0039092. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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