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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039093 through 18771 annotations produced 1 hits



(CG16723):

Annotation Number : CG10183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039092
Gbrowse : chr3R:19421419-19424756 (-) // 100.0 //
Probeset : 1623642_at
Accessions : protein= NP_651159;, nucleotide= NM_142902;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0039092.
VDRC has 2 RNAi stocks for FBgn0039092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 2.40None
Head5 ± 10 of 4 5.90None
Eye2 ± 00 of 4 2.44None
Thoracicoabdominal ganglion2 ± 10 of 4 3.10None
Salivary gland5 ± 40 of 4 6.94None
Crop2 ± 10 of 4 2.30None
Midgut12 ± 20 of 414.70Up
Tubule2 ± 00 of 4 2.40Up
Hindgut4 ± 10 of 4 5.60None
Heart3 ± 10 of 4 4.06None
Fat body1 ± 10 of 4 1.53None
Ovary1 ± 00 of 4 1.30None
Testis0 ± 00 of 4 0.90None
Male accessory glands2 ± 00 of 4 3.30None
Virgin spermatheca3 ± 10 of 4 4.03None
Mated spermatheca3 ± 00 of 4 4.44Up
Adult carcass8 ± 20 of 410.10None
Larval CNS1 ± 10 of 4 1.56None
Larval Salivary gland1 ± 00 of 4 1.32None
Larval midgut13 ± 20 of 415.32Up
Larval tubule0 ± 00 of 4 0.90None
Larval hindgut1 ± 00 of 4 2.21None
Larval fat body4 ± 10 of 4 4.70None
Larval trachea1 ± 20 of 4 1.91None
Larval carcass1 ± 00 of 4 1.35None
S2 cells (growing)0 ± 00 of 4 1.03None
Whole fly0 ± 00 of 4

Looking for FBgn0039093. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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