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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039104 through 18771 annotations produced 1 hits


(CG10252):

Annotation Number : CG10252
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039104
Gbrowse : chr3R:19520935-19522000 (-) // 100.0 //
Probeset : 1637766_at
Accessions : protein= NP_651171;, nucleotide= NM_142914;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039104.
BDGP gene expression has embryonic in situ data for CG10252: 8 pix of staining in 1 body parts.
BioGrid reports that CG10252 interacts with CG1486 CG32018 CG3792 CG9745 .
VDRC has 1 RNAi stocks for FBgn0039104 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.00Down
Head8 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.00Down
Salivary gland19 ± 40 of 4 0.02Down
Crop5 ± 20 of 4 0.00Down
Midgut5 ± 20 of 4 0.00Down
Tubule12 ± 31 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart10 ± 10 of 4 0.01Down
Fat body7 ± 50 of 4 0.01Down
Ovary3 ± 00 of 4 0.00Down
Testis4053 ± 2594 of 4 3.10Up
Male accessory glands20 ± 42 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.00Down
Mated spermatheca15 ± 51 of 4 0.01Down
Adult carcass39 ± 113 of 4 0.00Down
Larval CNS6 ± 00 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.00Down
Larval midgut11 ± 10 of 4 0.01Down
Larval tubule6 ± 10 of 4 0.00Down
Larval hindgut8 ± 20 of 4 0.01Down
Larval fat body814 ± 3704 of 4 0.60None
Larval trachea45 ± 683 of 4 0.04Down
Larval carcass5 ± 20 of 4 0.00Down
S2 cells (growing)5 ± 00 of 4 0.00Down
Whole fly1297 ± 484 of 4

Looking for FBgn0039104. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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