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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039108 through 18771 annotations produced 1 hits


Annotation Number : CG10232
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039108
Gbrowse : chr3R:19545197-19546170 (-) // 100.0 //
Probeset : 1637358_at
Accessions : protein= NP_651175;, nucleotide= NM_142918;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0039108.
Homophila reports that CG10232 is a close match (5e-11) to human gene KLK1;KLKR (NP_002248), a gene associated with [Kallikrein, decreased urinary activity of] (3).
VDRC has 1 RNAi stocks for FBgn0039108 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head1 00 of 4 0.70None
Eye2 10 of 4 1.35None
Thoracicoabdominal ganglion1 00 of 4 0.70None
Salivary gland1 00 of 4 0.73None
Crop2 00 of 4 1.20None
Midgut1 00 of 4 0.60None
Tubule2 00 of 4 1.30None
Hindgut1 00 of 4 0.70None
Heart2 00 of 4 1.12None
Fat body2 10 of 4 1.23None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.80None
Male accessory glands3 10 of 4 1.70None
Virgin spermatheca1 00 of 4 0.53None
Mated spermatheca1 00 of 4 0.73None
Adult carcass2 10 of 4 1.40None
Larval CNS3 20 of 4 1.62None
Larval Salivary gland3 10 of 4 1.88None
Larval midgut0 00 of 4 0.47None
Larval tubule1 00 of 4 0.70None
Larval hindgut1 00 of 4 0.63None
Larval fat body3 00 of 4 1.50None
Larval trachea31 74 of 415.99Up
Larval carcass2 00 of 4 1.12None
S2 cells (growing)1430 304 of 4733.55Up
Whole fly2 00 of 4

Looking for FBgn0039108. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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