Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039126 through 18771 annotations produced 1 hits



(CG13601):

Annotation Number : CG13601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039126
Gbrowse : chr3R:19752093-19753354 (-) // 100.0 //
Probeset : 1637559_at
Accessions : protein= NP_651192;, nucleotide= NM_142935;
FlyMine data for FBgn0039126.
BDGP gene expression has embryonic in situ data for CG13601: 4 pix of staining in 1 body parts.
Homophila reports that CG13601 is a close match (8e-18) to human gene MGA3;OPA3 (NP_001017989), a gene associated with 3-methylglutaconic aciduria, type III, 258501 (3);Optic atrophy and cataract, 165300 (3).
VDRC has 2 RNAi stocks for FBgn0039126 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 ± 134 of 4 0.70Down
Head120 ± 44 of 4 0.50Down
Eye117 ± 134 of 4 0.53Down
Thoracicoabdominal ganglion182 ± 74 of 4 0.80None
Salivary gland89 ± 74 of 4 0.41Down
Crop208 ± 34 of 4 0.90None
Midgut222 ± 134 of 4 1.00None
Tubule171 ± 114 of 4 0.80Down
Hindgut187 ± 64 of 4 0.90None
Heart129 ± 94 of 4 0.59Down
Fat body97 ± 124 of 4 0.44Down
Ovary290 ± 24 of 4 1.30Up
Testis154 ± 74 of 4 0.70Down
Male accessory glands90 ± 44 of 4 0.40Down
Virgin spermatheca83 ± 124 of 4 0.38Down
Mated spermatheca89 ± 24 of 4 0.41Down
Adult carcass110 ± 34 of 4 0.50Down
Larval CNS154 ± 54 of 4 0.70Down
Larval Salivary gland92 ± 34 of 4 0.42Down
Larval midgut142 ± 94 of 4 0.65Down
Larval tubule96 ± 34 of 4 0.40Down
Larval hindgut183 ± 94 of 4 0.83None
Larval fat body121 ± 54 of 4 0.60Down
Larval trachea231 ± 184 of 4 1.05None
Larval carcass172 ± 144 of 4 0.78None
S2 cells (growing)204 ± 24 of 4 0.93None
Whole fly220 ± 174 of 4

Looking for FBgn0039126. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime