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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039129 through 18771 annotations produced 1 hits



Ribosomal protein S19b (RpS19b):

Annotation Number : CG5338
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039129
Gbrowse : chr3R:19758445-19759252 (-) // 100.0 //
Probeset : 1634464_at
Accessions : protein= NP_651195;, nucleotide= NM_142938;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0039129.
BDGP gene expression has embryonic in situ data for CG5338: 4 pix of staining in 1 body parts.
Homophila reports that CG5338 is a close match (3e-42) to human gene DBA;RPS19 (NP_001013), a gene associated with Anemia, Diamond-Blackfan, 105650 (3).
BioGrid reports that CG5338 interacts with CG8107 .
TRiP has 1 RNAi stocks for FBgn0039129 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039129 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.10Down
Salivary gland11 ± 31 of 4 0.22Down
Crop5 ± 10 of 4 0.10Down
Midgut9 ± 32 of 4 0.20Down
Tubule7 ± 00 of 4 0.10Down
Hindgut7 ± 22 of 4 0.10Down
Heart3 ± 21 of 4 0.08Down
Fat body2 ± 00 of 4 0.06Down
Ovary6 ± 21 of 4 0.10Down
Testis573 ± 194 of 411.50Up
Male accessory glands9 ± 10 of 4 0.20Down
Virgin spermatheca7 ± 12 of 4 0.15Down
Mated spermatheca7 ± 21 of 4 0.15Down
Adult carcass8 ± 20 of 4 0.20Down
Larval CNS10 ± 32 of 4 0.20Down
Larval Salivary gland3 ± 10 of 4 0.06Down
Larval midgut5 ± 20 of 4 0.12Down
Larval tubule8 ± 11 of 4 0.20Down
Larval hindgut6 ± 11 of 4 0.13Down
Larval fat body116 ± 404 of 4 2.30None
Larval trachea6 ± 51 of 4 0.14Down
Larval carcass5 ± 10 of 4 0.12Down
S2 cells (growing)52 ± 34 of 4 1.05None
Whole fly49 ± 44 of 4

Looking for FBgn0039129. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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