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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039131 through 18771 annotations produced 1 hits



(CG12268):

Annotation Number : CG12268
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039131
Gbrowse : chr3R:19769349-19774141 (-) // 100.0 //
Probeset : 1629551_s_at
Accessions : protein= NP_651197; /// NP_788727;, nucleotide= NM_142940; /// NM_176550;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0039131.
BDGP gene expression has embryonic in situ data for CG12268: 17 pix of staining in 12 body parts.
BioGrid reports that CG12268 interacts with CG15561 .
VDRC has 2 RNAi stocks for FBgn0039131 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head43 ± 14 of 4 0.60Down
Eye37 ± 24 of 4 0.52Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland6 ± 30 of 4 0.09Down
Crop39 ± 23 of 4 0.50Down
Midgut8 ± 30 of 4 0.10Down
Tubule10 ± 10 of 4 0.10Down
Hindgut589 ± 324 of 4 8.20Up
Heart11 ± 11 of 4 0.17Down
Fat body5 ± 20 of 4 0.08Down
Ovary2 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca36 ± 24 of 4 0.51Down
Mated spermatheca69 ± 74 of 4 0.96None
Adult carcass68 ± 64 of 4 1.00None
Larval CNS8 ± 20 of 4 0.11Down
Larval Salivary gland3 ± 10 of 4 0.05Down
Larval midgut6 ± 20 of 4 0.08Down
Larval tubule7 ± 20 of 4 0.10Down
Larval hindgut112 ± 144 of 4 1.56None
Larval fat body7 ± 20 of 4 0.10Down
Larval trachea9 ± 41 of 4 0.13Down
Larval carcass59 ± 222 of 4 0.83None
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly72 ± 74 of 4

Looking for FBgn0039131. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime