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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039141 through 18771 annotations produced 2 hits



Dspastin (spas):

Annotation Number : CG5977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039141
Gbrowse : chr3R:19863939-19868376 (+) // 100.0 //
Probeset : 1629123_at
Accessions : protein= NP_651206; /// NP_732941;, nucleotide= NM_142949; /// NM_170115;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0039141.
Homophila reports that CG5977 is a close match (3e-15) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
TRiP has 1 RNAi stocks for FBgn0039141 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain315 184 of 4 2.10Up
Head100 54 of 4 0.70Down
Eye31 24 of 4 0.22Down
Thoracicoabdominal ganglion291 314 of 4 2.00Up
Salivary gland112 74 of 4 0.76Down
Crop68 24 of 4 0.50Down
Midgut69 64 of 4 0.50Down
Tubule125 44 of 4 0.90Down
Hindgut97 24 of 4 0.70Down
Heart36 24 of 4 0.25Down
Fat body65 24 of 4 0.45Down
Ovary322 104 of 4 2.20Up
Testis30 54 of 4 0.20Down
Male accessory glands61 44 of 4 0.40Down
Virgin spermatheca64 84 of 4 0.44Down
Mated spermatheca51 34 of 4 0.35Down
Adult carcass62 54 of 4 0.40Down
Larval CNS304 304 of 4 2.07Up
Larval Salivary gland158 124 of 4 1.08None
Larval midgut93 114 of 4 0.64Down
Larval tubule256 174 of 4 1.70Up
Larval hindgut193 94 of 4 1.32Up
Larval fat body94 44 of 4 0.60Down
Larval trachea102 64 of 4 0.70Down
Larval carcass120 154 of 4 0.82None
S2 cells (growing)142 54 of 4 0.97None
Whole fly146 94 of 4



Dspastin (spas):

Annotation Number : CG5977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039141
Gbrowse : chr3R:19863939-19867573 (+) // 100.0 //
Probeset : 1628019_a_at
Accessions : protein= NP_651206; /// NP_732941;, nucleotide= NM_142949; /// NM_170115;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0039141.
Homophila reports that CG5977 is a close match (3e-15) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).
TRiP has 1 RNAi stocks for FBgn0039141 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 14 of 4 0.90None
Head29 44 of 4 0.40Down
Eye15 23 of 4 0.19Down
Thoracicoabdominal ganglion62 74 of 4 0.80None
Salivary gland53 64 of 4 0.66Down
Crop31 14 of 4 0.40Down
Midgut34 34 of 4 0.40Down
Tubule27 14 of 4 0.30Down
Hindgut37 24 of 4 0.50Down
Heart12 14 of 4 0.15Down
Fat body21 34 of 4 0.26Down
Ovary115 64 of 4 1.40Up
Testis222 94 of 4 2.70Up
Male accessory glands27 23 of 4 0.30Down
Virgin spermatheca9 12 of 4 0.12Down
Mated spermatheca9 01 of 4 0.12Down
Adult carcass24 34 of 4 0.30Down
Larval CNS84 104 of 4 1.04None
Larval Salivary gland47 24 of 4 0.58Down
Larval midgut37 54 of 4 0.46Down
Larval tubule79 44 of 4 1.00None
Larval hindgut52 44 of 4 0.64Down
Larval fat body93 264 of 4 1.20None
Larval trachea23 14 of 4 0.29Down
Larval carcass29 44 of 4 0.37Down
S2 cells (growing)172 14 of 4 2.12Up
Whole fly81 84 of 4

Looking for FBgn0039141. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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