FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039145 through 18771 annotations produced 2 hits

(CG6000):

Annotation Number : CG6000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039145
Gbrowse : chr3R:19880139-19880822 (+) // 100.0 //
Probeset : 1631899_a_at
Accessions : protein= NP_651210; /// NP_732951;, nucleotide= NM_142953; /// NM_170122;
Interpro : 0051082 // unfolded protein binding // inferred from sequence or structural similarity
FlyMine data for FBgn0039145.
BDGP gene expression has embryonic in situ data for CG6000: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0039145 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	93 ± 2	4 of 4	0.60	Down
Head	114 ± 13	4 of 4	0.70	None
Eye	95 ± 5	4 of 4	0.63	Down
Thoracicoabdominal ganglion	118 ± 3	4 of 4	0.80	None
Salivary gland	107 ± 10	4 of 4	0.70	None
Crop	109 ± 4	4 of 4	0.70	None
Midgut	80 ± 2	4 of 4	0.50	Down
Tubule	78 ± 4	4 of 4	0.50	Down
Hindgut	126 ± 5	4 of 4	0.80	None
Heart	129 ± 5	4 of 4	0.85	None
Fat body	122 ± 13	4 of 4	0.80	None
Ovary	213 ± 3	4 of 4	1.40	Up
Testis	45 ± 3	4 of 4	0.30	Down
Male accessory glands	33 ± 2	4 of 4	0.20	Down
Virgin spermatheca	58 ± 2	4 of 4	0.38	Down
Mated spermatheca	64 ± 9	4 of 4	0.42	Down
Adult carcass	105 ± 4	4 of 4	0.70	None
Larval CNS	192 ± 9	4 of 4	1.26	None
Larval Salivary gland	105 ± 6	4 of 4	0.69	None
Larval midgut	76 ± 4	4 of 4	0.50	Down
Larval tubule	38 ± 5	4 of 4	0.30	Down
Larval hindgut	136 ± 13	4 of 4	0.89	None
Larval fat body	52 ± 2	4 of 4	0.30	Down
Larval trachea	99 ± 17	4 of 4	0.65	None
Larval carcass	81 ± 10	4 of 4	0.53	Down
S2 cells (growing)	49 ± 1	4 of 4	0.32	Down
Whole fly	152 ± 18	4 of 4

(CG6000):

Annotation Number : CG6000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039145
Gbrowse : chr3R:19880234-19880822 (+) // 100.0 //
Probeset : 1625179_at
Accessions : protein= NP_651210; /// NP_732951;, nucleotide= NM_142953; /// NM_170122;
Interpro : 0051082 // unfolded protein binding // inferred from sequence or structural similarity
FlyMine data for FBgn0039145.
BDGP gene expression has embryonic in situ data for CG6000: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0039145 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	88 ± 0	4 of 4	0.80	Down
Head	99 ± 7	4 of 4	0.90	None
Eye	71 ± 8	4 of 4	0.65	Down
Thoracicoabdominal ganglion	94 ± 2	4 of 4	0.90	None
Salivary gland	74 ± 7	4 of 4	0.68	Down
Crop	89 ± 5	4 of 4	0.80	None
Midgut	82 ± 5	4 of 4	0.80	Down
Tubule	41 ± 1	4 of 4	0.40	Down
Hindgut	125 ± 5	4 of 4	1.20	None
Heart	136 ± 6	4 of 4	1.25	Up
Fat body	127 ± 21	4 of 4	1.16	None
Ovary	149 ± 2	4 of 4	1.40	Up
Testis	35 ± 2	4 of 4	0.30	Down
Male accessory glands	31 ± 2	0 of 4	0.30	Down
Virgin spermatheca	35 ± 1	4 of 4	0.33	Down
Mated spermatheca	39 ± 1	4 of 4	0.36	Down
Adult carcass	114 ± 6	4 of 4	1.00	None
Larval CNS	117 ± 10	4 of 4	1.07	None
Larval Salivary gland	71 ± 5	4 of 4	0.65	Down
Larval midgut	62 ± 6	4 of 4	0.57	Down
Larval tubule	31 ± 2	4 of 4	0.30	Down
Larval hindgut	96 ± 11	4 of 4	0.88	None
Larval fat body	51 ± 3	4 of 4	0.50	Down
Larval trachea	135 ± 11	4 of 4	1.23	Up
Larval carcass	72 ± 5	4 of 4	0.66	Down
S2 cells (growing)	68 ± 1	4 of 4	0.63	Down
Whole fly	109 ± 7	4 of 4

Looking for FBgn0039145. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720