Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039147 through 18771 annotations produced 1 hits


(CG10694):

Annotation Number : CG10694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039147
Gbrowse : chr3R:19933112-19934068 (+) // 100.0 //
Probeset : 1627597_at
Accessions : protein= NP_651212;, nucleotide= NM_142955;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003684 // damaged DNA binding // inferred from sequence or structural similarity /// 0003684 // damaged DNA binding //
FlyMine data for FBgn0039147.
BDGP gene expression has embryonic in situ data for CG10694: 4 pix of staining in 1 body parts.
BioGrid reports that CG10694 interacts with CG10979 CG11181 CG17009 CG17540 CG2109 CG2218 CG2960 CG3321 CG4303 CG4767 CG5271 CG5352 CG6755 CG7757 CG8436 CG1341 CG2789 CG12728 CG32756 Dmel CG17162 .
VDRC has 2 RNAi stocks for FBgn0039147 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.11Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland3 ± 00 of 4 0.20Down
Crop1 ± 00 of 4 0.10Down
Midgut2 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.10Down
Heart4 ± 10 of 4 0.26Down
Fat body1 ± 00 of 4 0.10Down
Ovary0 ± 00 of 4 0.00Down
Testis281 ± 154 of 416.00Up
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.07Down
Mated spermatheca1 ± 00 of 4 0.09Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.07Down
Larval Salivary gland5 ± 20 of 4 0.33Down
Larval midgut1 ± 00 of 4 0.09Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.04Down
Larval fat body32 ± 162 of 4 1.80None
Larval trachea3 ± 30 of 4 0.19Down
Larval carcass3 ± 10 of 4 0.20Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly17 ± 34 of 4

Looking for FBgn0039147. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime