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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039155 through 18771 annotations produced 1 hits



Kallmann (kal-1):

Annotation Number : CG6173
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039155
Gbrowse : chr3R:19967161-19973213 (+) // 100.0 //
Probeset : 1628493_at
Accessions : protein= NP_651220;, nucleotide= NM_142963;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix
Interpro : 0030414 // peptidase inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0039155.
Homophila reports that CG6173 is a close match (2e-28) to human gene ADMLX;KAL1;KMS (NP_000207), a gene associated with Kallmann syndrome (3).
VDRC has 2 RNAi stocks for FBgn0039155 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head131 ± 84 of 4 3.20Up
Eye373 ± 334 of 4 8.97Up
Thoracicoabdominal ganglion8 ± 11 of 4 0.20Down
Salivary gland8 ± 20 of 4 0.21Down
Crop12 ± 12 of 4 0.30Down
Midgut11 ± 10 of 4 0.30Down
Tubule3 ± 10 of 4 0.10Down
Hindgut19 ± 14 of 4 0.50Down
Heart42 ± 74 of 4 1.02None
Fat body94 ± 244 of 4 2.27Up
Ovary48 ± 24 of 4 1.20None
Testis8 ± 02 of 4 0.20Down
Male accessory glands28 ± 34 of 4 0.70None
Virgin spermatheca30 ± 24 of 4 0.73None
Mated spermatheca88 ± 94 of 4 2.11Up
Adult carcass35 ± 34 of 4 0.90None
Larval CNS16 ± 44 of 4 0.40Down
Larval Salivary gland23 ± 34 of 4 0.57None
Larval midgut12 ± 20 of 4 0.30Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut175 ± 214 of 4 4.20Up
Larval fat body940 ± 784 of 422.50Up
Larval trachea32 ± 194 of 4 0.78None
Larval carcass33 ± 54 of 4 0.81None
S2 cells (growing)27 ± 24 of 4 0.67None
Whole fly41 ± 64 of 4

Looking for FBgn0039155. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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