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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039157 through 18771 annotations produced 2 hits



Myosin 95E (Myo95E):

Annotation Number : CG31134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039157
Gbrowse : chr3R:19980542-19984724 (-) // 100.0 //
Probeset : 1631844_at
Accessions : protein= NP_001027204; /// NP_001027205; /// NP_001027206; /// NP_001027207; /// NP_001027208; /// NP_996278; /// NP_996279;, nucleotide= NM_001032033; /// NM_001032034; /// NM_001032035; /// NM_001032036; /// NM_001032037; /// NM_206555; /// NM_206556;
Pathway : 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // non-traceable author s
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0039157.
VDRC has 3 RNAi stocks for FBgn0039157 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain217 ± 74 of 4 6.40Up
Head71 ± 84 of 4 2.10Up
Eye142 ± 124 of 4 4.22Up
Thoracicoabdominal ganglion146 ± 44 of 4 4.30Up
Salivary gland72 ± 14 of 4 2.16Up
Crop110 ± 64 of 4 3.30Up
Midgut35 ± 44 of 4 1.10None
Tubule66 ± 34 of 4 2.00Up
Hindgut57 ± 14 of 4 1.70Up
Heart66 ± 74 of 4 1.98Up
Fat body87 ± 54 of 4 2.60Up
Ovary45 ± 14 of 4 1.30Up
Testis5 ± 14 of 4 0.20Down
Male accessory glands39 ± 14 of 4 1.20None
Virgin spermatheca76 ± 44 of 4 2.27Up
Mated spermatheca79 ± 34 of 4 2.35Up
Adult carcass34 ± 24 of 4 1.00None
Larval CNS203 ± 334 of 4 6.02Up
Larval Salivary gland53 ± 54 of 4 1.58Up
Larval midgut39 ± 24 of 4 1.16None
Larval tubule45 ± 34 of 4 1.40Up
Larval hindgut46 ± 04 of 4 1.38Up
Larval fat body58 ± 64 of 4 1.70Up
Larval trachea69 ± 74 of 4 2.06Up
Larval carcass33 ± 24 of 4 0.98None
S2 cells (growing)53 ± 14 of 4 1.57Up
Whole fly33 ± 34 of 4



Myosin 95E (Myo95E):

Annotation Number : CG31135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039157
Gbrowse : chr3R:19984940-19987217 (-) // 100.0 //
Probeset : 1627496_at
Accessions : protein= NP_001027204; /// NP_001027205; /// NP_001027206; /// NP_001027207; /// NP_001027208; /// NP_996278; /// NP_996279;, nucleotide= NM_001032033; /// NM_001032034; /// NM_001032035; /// NM_001032036; /// NM_001032037; /// NM_206555; /// NM_206556;
Pathway : 0016459 // myosin complex // inferred from electronic annotation /// 0016459 // myosin complex // non-traceable author s
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0039157.
VDRC has 3 RNAi stocks for FBgn0039157 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 4.20Up
Head4 ± 20 of 4 2.80None
Eye1 ± 00 of 4 0.83None
Thoracicoabdominal ganglion1 ± 00 of 4 0.80None
Salivary gland2 ± 00 of 4 1.55None
Crop2 ± 10 of 4 1.50None
Midgut1 ± 00 of 4 1.00None
Tubule0 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.80None
Heart0 ± 00 of 4 0.30Down
Fat body1 ± 00 of 4 0.61None
Ovary6 ± 00 of 4 3.90Up
Testis0 ± 00 of 4 0.30Down
Male accessory glands1 ± 00 of 4 0.80None
Virgin spermatheca0 ± 00 of 4 0.50None
Mated spermatheca1 ± 00 of 4 0.70None
Adult carcass4 ± 20 of 4 2.50None
Larval CNS3 ± 30 of 4 1.97None
Larval Salivary gland1 ± 00 of 4 1.03None
Larval midgut3 ± 10 of 4 2.02None
Larval tubule1 ± 00 of 4 1.00None
Larval hindgut2 ± 10 of 4 1.20None
Larval fat body1 ± 00 of 4 1.00None
Larval trachea3 ± 00 of 4 1.88None
Larval carcass1 ± 00 of 4 0.77None
S2 cells (growing)4 ± 10 of 4 2.86None
Whole fly1 ± 00 of 4

Looking for FBgn0039157. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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