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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039158 through 18771 annotations produced 1 hits



(CG6182):

Annotation Number : CG6182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039158
Gbrowse : chr3R:19987511-19988939 (+) // 100.0 //
Probeset : 1641700_at
Accessions : protein= NP_651223;, nucleotide= NM_142966;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferr
FlyMine data for FBgn0039158.
VDRC has 3 RNAi stocks for FBgn0039158 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 34 of 4 1.00None
Head53 34 of 4 0.90None
Eye83 34 of 4 1.35None
Thoracicoabdominal ganglion101 54 of 4 1.60Up
Salivary gland41 24 of 4 0.66None
Crop88 54 of 4 1.40Up
Midgut53 54 of 4 0.90None
Tubule57 14 of 4 0.90Down
Hindgut54 14 of 4 0.90None
Heart63 24 of 4 1.02None
Fat body57 84 of 4 0.93None
Ovary129 54 of 4 2.10Up
Testis25 14 of 4 0.40Down
Male accessory glands52 54 of 4 0.80None
Virgin spermatheca109 24 of 4 1.76Up
Mated spermatheca115 14 of 4 1.86Up
Adult carcass51 24 of 4 0.80None
Larval CNS134 124 of 4 2.17Up
Larval Salivary gland63 34 of 4 1.02None
Larval midgut48 44 of 4 0.78None
Larval tubule106 14 of 4 1.70Up
Larval hindgut64 34 of 4 1.04None
Larval fat body71 44 of 4 1.20None
Larval trachea88 54 of 4 1.42Up
Larval carcass71 44 of 4 1.15None
S2 cells (growing)59 34 of 4 0.96None
Whole fly62 74 of 4

Looking for FBgn0039158. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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