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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039160 through 18771 annotations produced 1 hits



(CG5510):

Annotation Number : CG5510
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039160
Gbrowse : chr3R:19993394-19995283 (-) // 100.0 //
Probeset : 1626811_at
Accessions : protein= NP_651224;, nucleotide= NM_142967;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0039160.
BDGP gene expression has embryonic in situ data for CG5510: 4 pix of staining in 1 body parts.
Homophila reports that CG5510 is a close match (4e-37) to human gene ERGIC53;F5F8D;LMAN1;MCFD1 (NP_005561), a gene associated with Combined factor V and VIII deficiency, 227300 (3).
VDRC has 4 RNAi stocks for FBgn0039160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 ± 34 of 4 0.80Down
Head183 ± 104 of 4 0.70Down
Eye238 ± 44 of 4 0.94None
Thoracicoabdominal ganglion167 ± 64 of 4 0.70Down
Salivary gland170 ± 84 of 4 0.67Down
Crop289 ± 84 of 4 1.10None
Midgut334 ± 104 of 4 1.30Up
Tubule75 ± 54 of 4 0.30Down
Hindgut263 ± 44 of 4 1.00None
Heart292 ± 164 of 4 1.15None
Fat body322 ± 224 of 4 1.27Up
Ovary369 ± 74 of 4 1.50Up
Testis371 ± 144 of 4 1.50Up
Male accessory glands342 ± 164 of 4 1.30Up
Virgin spermatheca137 ± 24 of 4 0.54Down
Mated spermatheca161 ± 64 of 4 0.64Down
Adult carcass227 ± 104 of 4 0.90None
Larval CNS353 ± 204 of 4 1.39Up
Larval Salivary gland451 ± 184 of 4 1.77Up
Larval midgut372 ± 244 of 4 1.46Up
Larval tubule212 ± 64 of 4 0.80None
Larval hindgut316 ± 144 of 4 1.24Up
Larval fat body336 ± 174 of 4 1.30Up
Larval trachea375 ± 304 of 4 1.48Up
Larval carcass516 ± 104 of 4 2.03Up
S2 cells (growing)537 ± 64 of 4 2.11Up
Whole fly254 ± 144 of 4

Looking for FBgn0039160. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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