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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039163 through 18771 annotations produced 1 hits



(CG5515):

Annotation Number : CG5515
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039163
Gbrowse : chr3R:20013443-20014663 (-) // 100.0 //
Probeset : 1634168_s_at
Accessions : protein= NP_651227; /// NP_788731;, nucleotide= NM_142970; /// NM_176554;
FlyMine data for FBgn0039163.
VDRC has 2 RNAi stocks for FBgn0039163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain256 ± 104 of 4 0.80Down
Head228 ± 24 of 4 0.80Down
Eye163 ± 54 of 4 0.54Down
Thoracicoabdominal ganglion320 ± 134 of 4 1.10None
Salivary gland368 ± 104 of 4 1.21Up
Crop293 ± 44 of 4 1.00None
Midgut220 ± 94 of 4 0.70Down
Tubule367 ± 154 of 4 1.20Up
Hindgut263 ± 14 of 4 0.90None
Heart198 ± 54 of 4 0.65Down
Fat body301 ± 294 of 4 0.99None
Ovary486 ± 84 of 4 1.60Up
Testis246 ± 34 of 4 0.80Down
Male accessory glands255 ± 44 of 4 0.80Down
Virgin spermatheca479 ± 184 of 4 1.58Up
Mated spermatheca514 ± 164 of 4 1.69Up
Adult carcass232 ± 44 of 4 0.80Down
Larval CNS414 ± 174 of 4 1.36Up
Larval Salivary gland431 ± 204 of 4 1.42Up
Larval midgut202 ± 104 of 4 0.67Down
Larval tubule302 ± 54 of 4 1.00None
Larval hindgut304 ± 34 of 4 1.00None
Larval fat body384 ± 244 of 4 1.30Up
Larval trachea264 ± 194 of 4 0.87None
Larval carcass329 ± 64 of 4 1.08None
S2 cells (growing)380 ± 54 of 4 1.25Up
Whole fly304 ± 134 of 4

Looking for FBgn0039163. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime