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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039165 through 18771 annotations produced 1 hits



(CG6204):

Annotation Number : CG6204
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039165
Gbrowse : chr3R:20019587-20022609 (+) // 100.0 //
Probeset : 1634117_at
Accessions : protein= NP_651229;, nucleotide= NM_142972;
FlyMine data for FBgn0039165.
BDGP gene expression has embryonic in situ data for CG6204: 4 pix of staining in 1 body parts.
Homophila reports that CG6204 is a close match (2e-12) to human gene CATF1;HMN6;IGHMBP2;SMARD1;SMUBP2 (NP_002171), a gene associated with Neuronopathy, distal hereditary motor, type VI, 604320 (3).
VDRC has 2 RNAi stocks for FBgn0039165 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 ± 44 of 4 1.70Up
Head74 ± 44 of 4 1.60Up
Eye92 ± 24 of 4 1.96Up
Thoracicoabdominal ganglion81 ± 54 of 4 1.70Up
Salivary gland185 ± 114 of 4 3.94Up
Crop97 ± 14 of 4 2.10Up
Midgut103 ± 04 of 4 2.20Up
Tubule82 ± 24 of 4 1.70Up
Hindgut86 ± 34 of 4 1.80Up
Heart53 ± 14 of 4 1.14None
Fat body58 ± 54 of 4 1.25Up
Ovary65 ± 44 of 4 1.40Up
Testis49 ± 14 of 4 1.10None
Male accessory glands188 ± 34 of 4 4.00Up
Virgin spermatheca94 ± 44 of 4 2.00Up
Mated spermatheca92 ± 24 of 4 1.97Up
Adult carcass65 ± 44 of 4 1.40Up
Larval CNS50 ± 84 of 4 1.07None
Larval Salivary gland52 ± 44 of 4 1.12None
Larval midgut85 ± 44 of 4 1.81Up
Larval tubule80 ± 24 of 4 1.70Up
Larval hindgut67 ± 64 of 4 1.43Up
Larval fat body57 ± 44 of 4 1.20None
Larval trachea48 ± 64 of 4 1.04None
Larval carcass60 ± 34 of 4 1.29Up
S2 cells (growing)128 ± 24 of 4 2.74Up
Whole fly47 ± 24 of 4

Looking for FBgn0039165. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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