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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039175 through 18771 annotations produced 1 hits



(CG5706):

Annotation Number : CG5706
Flybase ID : FBgn0039175
Gbrowse : chr3R:20076173-20078380 (-) // 100.0 //
Probeset : 1638711_at
Accessions : protein= NP_651237;, nucleotide= NM_142980;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0009328 // phenylalanine-tRNA ligase complex // inferred
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0000287 // magnesium ion binding // inferred fr
FlyMine data for FBgn0039175.
BDGP gene expression has embryonic in situ data for CG5706: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0039175 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039175 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 24 of 4 0.40Down
Head67 44 of 4 0.40Down
Eye84 64 of 4 0.51Down
Thoracicoabdominal ganglion85 24 of 4 0.50Down
Salivary gland214 114 of 4 1.29Up
Crop115 64 of 4 0.70Down
Midgut123 54 of 4 0.70Down
Tubule148 134 of 4 0.90None
Hindgut81 34 of 4 0.50Down
Heart72 54 of 4 0.44Down
Fat body78 74 of 4 0.47Down
Ovary249 74 of 4 1.50Up
Testis60 24 of 4 0.40Down
Male accessory glands292 94 of 4 1.80Up
Virgin spermatheca106 74 of 4 0.64Down
Mated spermatheca128 74 of 4 0.78Down
Adult carcass78 44 of 4 0.50Down
Larval CNS192 184 of 4 1.17None
Larval Salivary gland398 244 of 4 2.41Up
Larval midgut105 24 of 4 0.64Down
Larval tubule76 14 of 4 0.50Down
Larval hindgut133 14 of 4 0.81Down
Larval fat body104 124 of 4 0.60Down
Larval trachea226 464 of 4 1.37None
Larval carcass191 184 of 4 1.16None
S2 cells (growing)244 24 of 4 1.48Up
Whole fly165 104 of 4

Looking for FBgn0039175. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime