Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039178 through 18771 annotations produced 1 hits



(CG6356):

Annotation Number : CG6356
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039178
Gbrowse : chr3R:20109855-20113939 (+) // 100.0 //
Probeset : 1624448_at
Accessions : protein= NP_651240;, nucleotide= NM_142983;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0039178.
Homophila reports that CG6356 is a close match (5e-20) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
TRiP has 1 RNAi stocks for FBgn0039178 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039178 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain230 ± 64 of 416.10Up
Head126 ± 54 of 4 8.80Up
Eye74 ± 24 of 4 5.21Up
Thoracicoabdominal ganglion431 ± 184 of 430.10Up
Salivary gland12 ± 30 of 4 0.88None
Crop6 ± 30 of 4 0.50None
Midgut8 ± 20 of 4 0.60None
Tubule2 ± 00 of 4 0.20Down
Hindgut6 ± 10 of 4 0.40Down
Heart3 ± 10 of 4 0.22Down
Fat body16 ± 20 of 4 1.17None
Ovary2 ± 10 of 4 0.20Down
Testis18 ± 13 of 4 1.30Up
Male accessory glands6 ± 10 of 4 0.40Down
Virgin spermatheca2 ± 00 of 4 0.16Down
Mated spermatheca10 ± 20 of 4 0.75None
Adult carcass35 ± 30 of 4 2.50Up
Larval CNS114 ± 194 of 4 7.98Up
Larval Salivary gland32 ± 52 of 4 2.25Up
Larval midgut11 ± 40 of 4 0.83None
Larval tubule11 ± 21 of 4 0.80None
Larval hindgut12 ± 10 of 4 0.84None
Larval fat body908 ± 594 of 463.40Up
Larval trachea6 ± 30 of 4 0.44Down
Larval carcass32 ± 82 of 4 2.26None
S2 cells (growing)9 ± 11 of 4 0.64None
Whole fly14 ± 03 of 4

Looking for FBgn0039178. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime