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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039180 through 18771 annotations produced 1 hits



(CG5715):

Annotation Number : CG5715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039180
Gbrowse : chr3R:20119148-20120092 (-) // 100.0 //
Probeset : 1633920_at
Accessions : protein= NP_651242;, nucleotide= NM_142985;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0017090 // meprin A complex // inferred from sequence or structural similarity
FlyMine data for FBgn0039180.
TRiP has 1 RNAi stocks for FBgn0039180 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039180 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.30None
Head4 ± 11 of 4 2.10None
Eye2 ± 10 of 4 1.34None
Thoracicoabdominal ganglion2 ± 10 of 4 1.10None
Salivary gland7 ± 30 of 4 3.20None
Crop4 ± 10 of 4 2.00None
Midgut13 ± 10 of 4 5.90Up
Tubule6 ± 00 of 4 2.80Up
Hindgut6 ± 00 of 4 2.80Up
Heart2 ± 00 of 4 1.20None
Fat body4 ± 40 of 4 1.91None
Ovary4 ± 10 of 4 1.90None
Testis3 ± 00 of 4 1.50None
Male accessory glands9 ± 10 of 4 4.00Up
Virgin spermatheca3 ± 10 of 4 1.38None
Mated spermatheca2 ± 21 of 4 1.26None
Adult carcass2 ± 10 of 4 1.20None
Larval CNS2 ± 10 of 4 0.99None
Larval Salivary gland4 ± 10 of 4 1.91None
Larval midgut8 ± 11 of 4 3.94Up
Larval tubule5 ± 00 of 4 2.40Up
Larval hindgut4 ± 00 of 4 2.15None
Larval fat body7 ± 10 of 4 3.60Up
Larval trachea0 ± 00 of 4 0.30None
Larval carcass25 ± 83 of 411.67None
S2 cells (growing)4 ± 00 of 4 2.00None
Whole fly2 ± 00 of 4

Looking for FBgn0039180. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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