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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039187 through 18771 annotations produced 1 hits



(CG6454):

Annotation Number : CG6454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039187
Gbrowse : chr3R:20174912-20181960 (+) // 100.0 //
Probeset : 1639444_a_at
Accessions : protein= NP_651249; /// NP_732985;, nucleotide= NM_142992; /// NM_170141;
FlyMine data for FBgn0039187.
BioGrid reports that CG6454 interacts with CG8933 .
VDRC has 3 RNAi stocks for FBgn0039187 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain539 ± 84 of 4 2.80Up
Head244 ± 44 of 4 1.30Up
Eye212 ± 104 of 4 1.09None
Thoracicoabdominal ganglion591 ± 164 of 4 3.00Up
Salivary gland362 ± 104 of 4 1.86Up
Crop243 ± 84 of 4 1.20Up
Midgut316 ± 34 of 4 1.60Up
Tubule96 ± 04 of 4 0.50Down
Hindgut229 ± 14 of 4 1.20Up
Heart158 ± 84 of 4 0.81Down
Fat body222 ± 154 of 4 1.14None
Ovary366 ± 74 of 4 1.90Up
Testis47 ± 24 of 4 0.20Down
Male accessory glands350 ± 54 of 4 1.80Up
Virgin spermatheca229 ± 74 of 4 1.18Up
Mated spermatheca235 ± 114 of 4 1.21Up
Adult carcass240 ± 24 of 4 1.20Up
Larval CNS224 ± 104 of 4 1.15None
Larval Salivary gland360 ± 144 of 4 1.85Up
Larval midgut249 ± 94 of 4 1.28Up
Larval tubule82 ± 34 of 4 0.40Down
Larval hindgut250 ± 34 of 4 1.28Up
Larval fat body230 ± 224 of 4 1.20None
Larval trachea269 ± 304 of 4 1.38Up
Larval carcass281 ± 134 of 4 1.44Up
S2 cells (growing)336 ± 44 of 4 1.73Up
Whole fly194 ± 104 of 4

Looking for FBgn0039187. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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