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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039192 through 18771 annotations produced 1 hits



(CG17784):

Annotation Number : CG17784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039192
Gbrowse : chr3R:20189802-20190702 (-) // 100.0 //
Probeset : 1636555_at
Accessions : protein= NP_651254;, nucleotide= NM_142997;
FlyMine data for FBgn0039192.
VDRC has 3 RNAi stocks for FBgn0039192 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30Down
Head1 ± 00 of 4 0.20Down
Eye3 ± 10 of 4 0.61None
Thoracicoabdominal ganglion5 ± 12 of 4 0.80None
Salivary gland4 ± 20 of 4 0.69None
Crop4 ± 11 of 4 0.70None
Midgut6 ± 11 of 4 0.90None
Tubule2 ± 00 of 4 0.40Down
Hindgut3 ± 10 of 4 0.50None
Heart4 ± 02 of 4 0.70None
Fat body6 ± 10 of 4 1.00None
Ovary2 ± 00 of 4 0.30Down
Testis10 ± 14 of 4 1.60None
Male accessory glands2 ± 10 of 4 0.40None
Virgin spermatheca3 ± 00 of 4 0.48Down
Mated spermatheca4 ± 10 of 4 0.72None
Adult carcass6 ± 30 of 4 1.00None
Larval CNS0 ± 00 of 4 0.13Down
Larval Salivary gland4 ± 21 of 4 0.67None
Larval midgut3 ± 11 of 4 0.49Down
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut2 ± 01 of 4 0.42Down
Larval fat body7 ± 11 of 4 1.20None
Larval trachea4 ± 21 of 4 0.65None
Larval carcass1 ± 00 of 4 0.25Down
S2 cells (growing)4 ± 00 of 4 0.67Down
Whole fly6 ± 02 of 4

Looking for FBgn0039192. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime