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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039203 through 18771 annotations produced 1 hits



(CG13618):

Annotation Number : CG13618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039203
Gbrowse : chr3R:20350521-20353261 (+) // 100.0 //
Probeset : 1626789_at
Accessions : protein= NP_651265;, nucleotide= NM_143008;
FlyMine data for FBgn0039203.
BDGP gene expression has embryonic in situ data for CG13618: 9 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0039203 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 11 of 4 0.10Down
Head170 ± 114 of 4 1.40Up
Eye20 ± 14 of 4 0.17Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.10Down
Salivary gland9 ± 20 of 4 0.08Down
Crop2643 ± 914 of 421.20Up
Midgut24 ± 04 of 4 0.20Down
Tubule6 ± 00 of 4 0.10Down
Hindgut3306 ± 704 of 426.60Up
Heart3 ± 10 of 4 0.02Down
Fat body8 ± 13 of 4 0.07Down
Ovary2 ± 00 of 4 0.00Down
Testis2 ± 01 of 4 0.00Down
Male accessory glands9 ± 10 of 4 0.10Down
Virgin spermatheca7 ± 13 of 4 0.06Down
Mated spermatheca6 ± 13 of 4 0.05Down
Adult carcass31 ± 54 of 4 0.20Down
Larval CNS4 ± 13 of 4 0.04Down
Larval Salivary gland2 ± 10 of 4 0.02Down
Larval midgut4 ± 00 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut11 ± 14 of 4 0.09Down
Larval fat body3 ± 11 of 4 0.00Down
Larval trachea92 ± 1044 of 4 0.74None
Larval carcass12 ± 33 of 4 0.10Down
S2 cells (growing)4 ± 10 of 4 0.03Down
Whole fly124 ± 144 of 4

Looking for FBgn0039203. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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