FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039205 through 18771 annotations produced 1 hits

(CG13623):

Annotation Number : CG13623
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039205
Gbrowse : chr3R:20355496-20356280 (-) // 100.0 //
Probeset : 1638216_at
Accessions : protein= NP_651267;, nucleotide= NM_143010;
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0051536 // iron-sulfur cluster bindin
FlyMine data for FBgn0039205.
BDGP gene expression has embryonic in situ data for CG13623: 4 pix of staining in 1 body parts.
BioGrid reports that CG13623 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0039205 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	363 ± 3	4 of 4	1.50	Up
Head	339 ± 16	4 of 4	1.40	Up
Eye	417 ± 22	4 of 4	1.77	Up
Thoracicoabdominal ganglion	532 ± 19	4 of 4	2.30	Up
Salivary gland	344 ± 20	4 of 4	1.46	Up
Crop	250 ± 12	4 of 4	1.10	None
Midgut	246 ± 4	4 of 4	1.00	None
Tubule	580 ± 24	4 of 4	2.50	Up
Hindgut	335 ± 3	4 of 4	1.40	Up
Heart	239 ± 9	4 of 4	1.01	None
Fat body	201 ± 14	4 of 4	0.85	None
Ovary	102 ± 3	4 of 4	0.40	Down
Testis	408 ± 13	4 of 4	1.70	Up
Male accessory glands	164 ± 9	4 of 4	0.70	None
Virgin spermatheca	239 ± 8	4 of 4	1.01	None
Mated spermatheca	262 ± 12	4 of 4	1.11	None
Adult carcass	559 ± 24	4 of 4	2.40	Up
Larval CNS	144 ± 9	4 of 4	0.61	Down
Larval Salivary gland	205 ± 6	4 of 4	0.87	None
Larval midgut	143 ± 5	4 of 4	0.61	Down
Larval tubule	294 ± 8	4 of 4	1.20	None
Larval hindgut	172 ± 8	4 of 4	0.73	None
Larval fat body	190 ± 11	4 of 4	0.80	None
Larval trachea	142 ± 11	4 of 4	0.60	Down
Larval carcass	217 ± 15	4 of 4	0.92	None
S2 cells (growing)	148 ± 6	4 of 4	0.63	Down
Whole fly	236 ± 24	4 of 4

Looking for FBgn0039205. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720