FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039212 through 18771 annotations produced 1 hits

syntaxin (Syx18):

Annotation Number : CG13626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039212
Gbrowse : chr3R:20449515-20451302 (-) // 100.0 //
Probeset : 1626506_at
Accessions : protein= NP_524485;, nucleotide= NM_079761;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0005938 // cell cortex // inferred from direct assay //
Interpro : 0005484 // SNAP receptor activity // inferred from sequence or structural similarity /// 0005484 // SNAP receptor activi
FlyMine data for FBgn0039212.
BDGP gene expression has embryonic in situ data for Syx18: 15 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0039212 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039212 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	147 ± 5	4 of 4	0.70	Down
Head	101 ± 10	4 of 4	0.50	Down
Eye	65 ± 2	4 of 4	0.33	Down
Thoracicoabdominal ganglion	115 ± 4	4 of 4	0.60	Down
Salivary gland	479 ± 32	4 of 4	2.39	Up
Crop	162 ± 7	4 of 4	0.80	Down
Midgut	122 ± 4	4 of 4	0.60	Down
Tubule	93 ± 15	4 of 4	0.50	Down
Hindgut	84 ± 1	4 of 4	0.40	Down
Heart	105 ± 6	4 of 4	0.53	Down
Fat body	84 ± 6	4 of 4	0.42	Down
Ovary	360 ± 6	4 of 4	1.80	Up
Testis	394 ± 11	4 of 4	2.00	Up
Male accessory glands	503 ± 16	4 of 4	2.50	Up
Virgin spermatheca	167 ± 9	4 of 4	0.84	Down
Mated spermatheca	201 ± 15	4 of 4	1.00	None
Adult carcass	99 ± 7	4 of 4	0.50	Down
Larval CNS	148 ± 3	4 of 4	0.74	Down
Larval Salivary gland	569 ± 14	4 of 4	2.84	Up
Larval midgut	116 ± 4	4 of 4	0.58	Down
Larval tubule	159 ± 2	4 of 4	0.80	Down
Larval hindgut	120 ± 7	4 of 4	0.60	Down
Larval fat body	141 ± 23	4 of 4	0.70	None
Larval trachea	154 ± 25	4 of 4	0.77	Down
Larval carcass	142 ± 3	4 of 4	0.71	Down
S2 cells (growing)	192 ± 5	4 of 4	0.96	None
Whole fly	200 ± 2	4 of 4

Looking for FBgn0039212. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720