Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039212 through 18771 annotations produced 1 hits



syntaxin (Syx18):

Annotation Number : CG13626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039212
Gbrowse : chr3R:20449515-20451302 (-) // 100.0 //
Probeset : 1626506_at
Accessions : protein= NP_524485;, nucleotide= NM_079761;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0005938 // cell cortex // inferred from direct assay //
Interpro : 0005484 // SNAP receptor activity // inferred from sequence or structural similarity /// 0005484 // SNAP receptor activi
FlyMine data for FBgn0039212.
BDGP gene expression has embryonic in situ data for Syx18: 15 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0039212 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039212 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 54 of 4 0.70Down
Head101 104 of 4 0.50Down
Eye65 24 of 4 0.33Down
Thoracicoabdominal ganglion115 44 of 4 0.60Down
Salivary gland479 324 of 4 2.39Up
Crop162 74 of 4 0.80Down
Midgut122 44 of 4 0.60Down
Tubule93 154 of 4 0.50Down
Hindgut84 14 of 4 0.40Down
Heart105 64 of 4 0.53Down
Fat body84 64 of 4 0.42Down
Ovary360 64 of 4 1.80Up
Testis394 114 of 4 2.00Up
Male accessory glands503 164 of 4 2.50Up
Virgin spermatheca167 94 of 4 0.84Down
Mated spermatheca201 154 of 4 1.00None
Adult carcass99 74 of 4 0.50Down
Larval CNS148 34 of 4 0.74Down
Larval Salivary gland569 144 of 4 2.84Up
Larval midgut116 44 of 4 0.58Down
Larval tubule159 24 of 4 0.80Down
Larval hindgut120 74 of 4 0.60Down
Larval fat body141 234 of 4 0.70None
Larval trachea154 254 of 4 0.77Down
Larval carcass142 34 of 4 0.71Down
S2 cells (growing)192 54 of 4 0.96None
Whole fly200 24 of 4

Looking for FBgn0039212. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime