FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039215 through 18771 annotations produced 1 hits

(CG6695):

Annotation Number : CG6695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039215
Gbrowse : chr3R:20480883-20485101 (+) // 100.0 //
Probeset : 1639626_at
Accessions : protein= NP_651276; /// NP_996288;, nucleotide= NM_143019; /// NM_206565;
Interpro : 0003729 // mRNA binding // inferred from sequence or structural similarity
FlyMine data for FBgn0039215.
BDGP gene expression has embryonic in situ data for CG6695: 18 pix of staining in 12 body parts.
VDRC has 3 RNAi stocks for FBgn0039215 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	98 ± 5	4 of 4	1.30	Up
Head	49 ± 2	4 of 4	0.60	Down
Eye	48 ± 3	4 of 4	0.64	Down
Thoracicoabdominal ganglion	85 ± 5	4 of 4	1.10	None
Salivary gland	105 ± 14	4 of 4	1.39	None
Crop	98 ± 3	4 of 4	1.30	Up
Midgut	51 ± 4	4 of 4	0.70	Down
Tubule	58 ± 0	4 of 4	0.80	Down
Hindgut	78 ± 2	4 of 4	1.00	None
Heart	58 ± 6	4 of 4	0.77	None
Fat body	73 ± 2	4 of 4	0.96	None
Ovary	147 ± 3	4 of 4	1.90	Up
Testis	65 ± 3	4 of 4	0.90	Down
Male accessory glands	93 ± 2	4 of 4	1.20	Up
Virgin spermatheca	60 ± 4	4 of 4	0.80	Down
Mated spermatheca	76 ± 2	4 of 4	1.00	None
Adult carcass	57 ± 5	4 of 4	0.70	Down
Larval CNS	253 ± 13	4 of 4	3.34	Up
Larval Salivary gland	127 ± 3	4 of 4	1.68	Up
Larval midgut	55 ± 2	4 of 4	0.73	Down
Larval tubule	55 ± 2	4 of 4	0.70	Down
Larval hindgut	83 ± 6	4 of 4	1.10	None
Larval fat body	60 ± 3	4 of 4	0.80	Down
Larval trachea	121 ± 4	4 of 4	1.60	Up
Larval carcass	103 ± 7	4 of 4	1.36	Up
S2 cells (growing)	143 ± 5	4 of 4	1.89	Up
Whole fly	76 ± 2	4 of 4

Looking for FBgn0039215. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720