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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039219 through 18771 annotations produced 1 hits



/// (CG11227 /// CG13630):

Annotation Number : CG13630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039219
Gbrowse : chr3R:20543656-20545084 (-) // 100.0 //
Probeset : 1625968_at
Accessions : protein= NP_651281;, nucleotide= NM_143024;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0039219.
BioGrid reports that CG13630 interacts with CG14534 CG18497 CG30497 CG4303 CG8907 CG9902 .
VDRC has 1 RNAi stocks for FBgn0039219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 ± 34 of 4 0.50Down
Head204 ± 74 of 4 0.90None
Eye291 ± 64 of 4 1.29Up
Thoracicoabdominal ganglion152 ± 44 of 4 0.70Down
Salivary gland104 ± 44 of 4 0.46Down
Crop184 ± 34 of 4 0.80Down
Midgut211 ± 104 of 4 0.90None
Tubule221 ± 24 of 4 1.00Down
Hindgut215 ± 24 of 4 1.00None
Heart231 ± 84 of 4 1.03None
Fat body210 ± 144 of 4 0.93None
Ovary297 ± 64 of 4 1.30Up
Testis205 ± 54 of 4 0.90None
Male accessory glands192 ± 44 of 4 0.90None
Virgin spermatheca330 ± 384 of 4 1.46None
Mated spermatheca293 ± 254 of 4 1.30None
Adult carcass203 ± 84 of 4 0.90None
Larval CNS305 ± 94 of 4 1.35Up
Larval Salivary gland166 ± 64 of 4 0.74Down
Larval midgut186 ± 64 of 4 0.82Down
Larval tubule272 ± 54 of 4 1.20Up
Larval hindgut250 ± 14 of 4 1.11None
Larval fat body190 ± 24 of 4 0.80Down
Larval trachea300 ± 154 of 4 1.33Up
Larval carcass218 ± 194 of 4 0.96None
S2 cells (growing)188 ± 34 of 4 0.83Down
Whole fly226 ± 114 of 4

Looking for FBgn0039219. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime