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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039225 through 18771 annotations produced 1 hits

Ets96B (Ets96B):

Annotation Number : CG6892
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039225
Gbrowse : chr3R:20617464-20622961 (+) // 100.0 //
Probeset : 1639808_at
Accessions : protein= NP_651286; /// NP_996290;, nucleotide= NM_143029; /// NM_206567;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0039225.
BDGP gene expression has embryonic in situ data for Ets96B: 4 pix of staining in 1 body parts.
Homophila reports that CG6892 is a close match (5e-11) to human gene ETV6;TEL (NP_001978), a gene associated with Leukemia, acute myeloid, somatic, 601626 (3).
TRiP has 2 RNAi stocks for FBgn0039225 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039225 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 21 of 4 1.40None
Head2 00 of 4 0.60None
Eye1 00 of 4 0.26None
Thoracicoabdominal ganglion2 10 of 4 0.70None
Salivary gland8 30 of 4 2.06None
Crop3 10 of 4 1.00None
Midgut12 30 of 4 3.30None
Tubule1 00 of 4 0.40Down
Hindgut2 00 of 4 0.60None
Heart2 10 of 4 0.73None
Fat body5 40 of 4 1.45None
Ovary1 00 of 4 0.40None
Testis30 14 of 4 7.80Up
Male accessory glands7 30 of 4 1.90None
Virgin spermatheca1 00 of 4 0.37None
Mated spermatheca1 00 of 4 0.33None
Adult carcass2 00 of 4 0.60None
Larval CNS6 30 of 4 1.77None
Larval Salivary gland6 20 of 4 1.57None
Larval midgut9 20 of 4 2.39None
Larval tubule2 00 of 4 0.70None
Larval hindgut1 00 of 4 0.35None
Larval fat body5 00 of 4 1.30None
Larval trachea1 00 of 4 0.28None
Larval carcass1 00 of 4 0.34None
S2 cells (growing)1 00 of 4 0.38None
Whole fly3 20 of 4

Looking for FBgn0039225. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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