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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039227 through 18771 annotations produced 1 hits



polybromo (polybromo):

Annotation Number : CG11375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039227
Gbrowse : chr3R:20625690-20630977 (-) // 100.0 //
Probeset : 1627776_at
Accessions : protein= NP_651288;, nucleotide= NM_143031;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electroni
FlyMine data for FBgn0039227.
BDGP gene expression has embryonic in situ data for CG11375: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0039227 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039227 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 24 of 4 1.20None
Head30 24 of 4 0.70Down
Eye58 24 of 4 1.30None
Thoracicoabdominal ganglion39 34 of 4 0.90None
Salivary gland47 44 of 4 1.06None
Crop26 14 of 4 0.60Down
Midgut16 20 of 4 0.40Down
Tubule39 34 of 4 0.90None
Hindgut27 14 of 4 0.60Down
Heart24 14 of 4 0.54Down
Fat body18 14 of 4 0.41Down
Ovary160 34 of 4 3.60Up
Testis8 02 of 4 0.20Down
Male accessory glands66 74 of 4 1.50None
Virgin spermatheca22 14 of 4 0.50Down
Mated spermatheca27 34 of 4 0.61Down
Adult carcass20 63 of 4 0.40Down
Larval CNS125 84 of 4 2.77Up
Larval Salivary gland69 14 of 4 1.54Up
Larval midgut14 22 of 4 0.33Down
Larval tubule25 14 of 4 0.60Down
Larval hindgut41 34 of 4 0.92None
Larval fat body19 24 of 4 0.40Down
Larval trachea73 84 of 4 1.63Up
Larval carcass37 14 of 4 0.83None
S2 cells (growing)87 54 of 4 1.93Up
Whole fly45 44 of 4

Looking for FBgn0039227. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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