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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039228 through 18771 annotations produced 1 hits



(CG6980):

Annotation Number : CG6980
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039228
Gbrowse : chr3R:20633332-20634399 (+) // 99.57 //
Probeset : 1640684_at
Accessions : protein= NP_651289;, nucleotide= NM_143032;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0039228.
BDGP gene expression has embryonic in situ data for CG6980: 14 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0039228 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.19Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body4 ± 30 of 4 0.08Down
Ovary3 ± 00 of 4 0.10Down
Testis706 ± 144 of 413.10Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.08Down
Mated spermatheca3 ± 10 of 4 0.06Down
Adult carcass8 ± 21 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.07Down
Larval Salivary gland10 ± 10 of 4 0.19Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body100 ± 503 of 4 1.90None
Larval trachea1 ± 10 of 4 0.02Down
Larval carcass2 ± 10 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly54 ± 64 of 4

Looking for FBgn0039228. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime