FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039229 through 18771 annotations produced 1 hits

Scaffold attachment factor B (Saf-B):

Annotation Number : CG6995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039229
Gbrowse : chr3R:20643190-20648095 (+) // 100.0 //
Probeset : 1641284_a_at
Accessions : protein= NP_001034066; /// NP_651292; /// NP_733041;, nucleotide= NM_001038977; /// NM_143035; /// NM_170169;
Pathway : via spliceosome // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred by curator /// 0005654 // nucleoplasm // inferred from direct assay /// 0016363 // nuclea
FlyMine data for FBgn0039229.
BDGP gene expression has embryonic in situ data for CG6995: 4 pix of staining in 1 body parts.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	496 ± 26	4 of 4	4.00	Up
Head	114 ± 6	4 of 4	0.90	None
Eye	171 ± 4	4 of 4	1.38	Up
Thoracicoabdominal ganglion	421 ± 23	4 of 4	3.40	Up
Salivary gland	189 ± 6	4 of 4	1.52	Up
Crop	131 ± 5	4 of 4	1.10	None
Midgut	110 ± 6	4 of 4	0.90	None
Tubule	166 ± 6	4 of 4	1.30	Up
Hindgut	147 ± 6	4 of 4	1.20	None
Heart	94 ± 5	4 of 4	0.75	Down
Fat body	126 ± 16	4 of 4	1.01	None
Ovary	308 ± 15	4 of 4	2.50	Up
Testis	71 ± 3	4 of 4	0.60	Down
Male accessory glands	180 ± 10	4 of 4	1.40	Up
Virgin spermatheca	113 ± 8	4 of 4	0.91	None
Mated spermatheca	121 ± 6	4 of 4	0.97	None
Adult carcass	102 ± 3	4 of 4	0.80	None
Larval CNS	397 ± 21	4 of 4	3.19	Up
Larval Salivary gland	184 ± 5	4 of 4	1.48	Up
Larval midgut	86 ± 2	4 of 4	0.69	Down
Larval tubule	126 ± 7	4 of 4	1.00	None
Larval hindgut	105 ± 6	4 of 4	0.84	None
Larval fat body	85 ± 9	4 of 4	0.70	Down
Larval trachea	244 ± 28	4 of 4	1.96	Up
Larval carcass	138 ± 4	4 of 4	1.11	None
S2 cells (growing)	221 ± 7	4 of 4	1.77	Up
Whole fly	124 ± 7	4 of 4

Looking for FBgn0039229. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720