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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039244 through 18771 annotations produced 1 hits


Annotation Number : CG11069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039244
Gbrowse : chr3R:20720465-20723335 (+) // 100.0 //
Probeset : 1631566_at
Accessions : protein= NP_651307;, nucleotide= NM_143050;
Pathway : 0043190 // ATP-binding cassette (ABC) transporter complex // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0039244.
BDGP gene expression has embryonic in situ data for CG11069: 15 pix of staining in 13 body parts.
Homophila reports that CG11069 is a close match (1e-44) to human gene ABCG5 (NP_071881), a gene associated with Sitosterolemia, 210250 (3).
VDRC has 2 RNAi stocks for FBgn0039244 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head34 34 of 4 1.30None
Eye36 14 of 4 1.42Up
Thoracicoabdominal ganglion4 20 of 4 0.20Down
Salivary gland33 62 of 4 1.28None
Crop97 54 of 4 3.80Up
Midgut5 20 of 4 0.20Down
Tubule4 00 of 4 0.20Down
Hindgut82 64 of 4 3.20Up
Heart2 10 of 4 0.11Down
Fat body5 20 of 4 0.20Down
Ovary16 23 of 4 0.60None
Testis17 23 of 4 0.70None
Male accessory glands116 64 of 4 4.50Up
Virgin spermatheca19 31 of 4 0.74None
Mated spermatheca23 24 of 4 0.92None
Adult carcass32 22 of 4 1.20None
Larval CNS8 00 of 4 0.32Down
Larval Salivary gland17 34 of 4 0.67None
Larval midgut11 50 of 4 0.46None
Larval tubule8 10 of 4 0.30Down
Larval hindgut118 54 of 4 4.57Up
Larval fat body9 21 of 4 0.40Down
Larval trachea286 264 of 411.09Up
Larval carcass128 174 of 4 4.98Up
S2 cells (growing)3 00 of 4 0.14Down
Whole fly25 34 of 4

Looking for FBgn0039244. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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