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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039249 through 18771 annotations produced 1 hits



(CG11168):

Annotation Number : CG11168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039249
Gbrowse : chr3R:20743867-20748113 (+) // 99.86 //
Probeset : 1637383_at
Accessions : protein= NP_001163715; /// NP_651311;, nucleotide= NM_001170244; /// NM_143054;
FlyMine data for FBgn0039249.
Homophila reports that CG11168 is a close match (2e-11) to human gene EHMT1;EUHMTASE1 (NP_079033), a gene associated with Chromosome 9q subtelomeric deletion syndrome, 610253 (3).
BioGrid reports that CG11168 interacts with CG7434 .
VDRC has 3 RNAi stocks for FBgn0039249 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 24 of 4 1.50Up
Head54 ± 44 of 4 0.90None
Eye59 ± 24 of 4 1.03None
Thoracicoabdominal ganglion87 ± 54 of 4 1.50Up
Salivary gland319 ± 124 of 4 5.53Up
Crop176 ± 64 of 4 3.10Up
Midgut110 ± 14 of 4 1.90Up
Tubule104 ± 54 of 4 1.80Up
Hindgut149 ± 34 of 4 2.60Up
Heart77 ± 64 of 4 1.34None
Fat body65 ± 64 of 4 1.13None
Ovary30 ± 24 of 4 0.50Down
Testis163 ± 24 of 4 2.80Up
Male accessory glands664 ± 344 of 411.50Up
Virgin spermatheca74 ± 54 of 4 1.30Up
Mated spermatheca93 ± 54 of 4 1.61Up
Adult carcass91 ± 144 of 4 1.60None
Larval CNS67 ± 104 of 4 1.16None
Larval Salivary gland1101 ± 454 of 419.07Up
Larval midgut101 ± 74 of 4 1.76Up
Larval tubule77 ± 24 of 4 1.30Up
Larval hindgut132 ± 74 of 4 2.29Up
Larval fat body46 ± 44 of 4 0.80None
Larval trachea158 ± 114 of 4 2.75Up
Larval carcass189 ± 84 of 4 3.28Up
S2 cells (growing)74 ± 34 of 4 1.29Up
Whole fly57 ± 24 of 4

Looking for FBgn0039249. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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