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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039252 through 18771 annotations produced 1 hits



(CG11771):

Annotation Number : CG11771
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039252
Gbrowse : chr3R:20757738-20760637 (+) // 100.0 //
Probeset : 1636636_at
Accessions : protein= NP_651314;, nucleotide= NM_143057;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0039252.
BDGP gene expression has embryonic in situ data for CG11771: 6 pix of staining in 9 body parts.
BioGrid reports that CG11771 interacts with CG3342 CG8942 CG9949 .
VDRC has 2 RNAi stocks for FBgn0039252 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain256 74 of 4 1.20None
Head168 54 of 4 0.80Down
Eye187 114 of 4 0.86None
Thoracicoabdominal ganglion300 84 of 4 1.40Up
Salivary gland235 114 of 4 1.08None
Crop288 94 of 4 1.30Up
Midgut230 94 of 4 1.10None
Tubule281 54 of 4 1.30Up
Hindgut287 34 of 4 1.30Up
Heart182 84 of 4 0.84Down
Fat body239 224 of 4 1.10None
Ovary312 64 of 4 1.40Up
Testis120 44 of 4 0.60Down
Male accessory glands194 124 of 4 0.90None
Virgin spermatheca205 114 of 4 0.94None
Mated spermatheca216 104 of 4 0.99None
Adult carcass299 84 of 4 1.40Up
Larval CNS216 134 of 4 0.99None
Larval Salivary gland381 84 of 4 1.75Up
Larval midgut216 124 of 4 0.99None
Larval tubule124 44 of 4 0.60Down
Larval hindgut273 174 of 4 1.25Up
Larval fat body109 54 of 4 0.50Down
Larval trachea229 44 of 4 1.05None
Larval carcass252 254 of 4 1.16None
S2 cells (growing)261 54 of 4 1.20Up
Whole fly218 114 of 4

Looking for FBgn0039252. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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