FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039257 through 18771 annotations produced 2 hits

tenectin (tnc):

Annotation Number : CG13648
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039257
Gbrowse : chr3R:20837484-20847081 (+) // 100.0 //
Probeset : 1624677_at
Accessions : protein= NP_651318;, nucleotide= NM_143061;
Pathway : 0031012 // extracellular matrix // inferred from direct assay
Interpro : 0005178 // integrin binding // inferred from direct assay
FlyMine data for FBgn0039257.
VDRC has 1 RNAi stocks for FBgn0039257 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	1.00	None
Head	2 ± 0	0 of 4	0.50	None
Eye	3 ± 1	0 of 4	0.65	None
Thoracicoabdominal ganglion	3 ± 0	0 of 4	0.80	None
Salivary gland	4 ± 0	0 of 4	0.97	None
Crop	3 ± 0	0 of 4	0.80	None
Midgut	8 ± 1	0 of 4	1.70	None
Tubule	4 ± 0	0 of 4	1.00	None
Hindgut	3 ± 0	0 of 4	0.70	None
Heart	4 ± 1	0 of 4	1.02	None
Fat body	4 ± 2	0 of 4	0.93	None
Ovary	3 ± 0	0 of 4	0.60	None
Testis	15 ± 4	0 of 4	3.30	None
Male accessory glands	6 ± 3	0 of 4	1.50	None
Virgin spermatheca	2 ± 0	0 of 4	0.50	None
Mated spermatheca	2 ± 0	0 of 4	0.43	None
Adult carcass	7 ± 2	0 of 4	1.50	None
Larval CNS	20 ± 3	1 of 4	4.32	Up
Larval Salivary gland	6 ± 1	0 of 4	1.37	None
Larval midgut	10 ± 2	0 of 4	2.26	None
Larval tubule	4 ± 1	0 of 4	0.90	None
Larval hindgut	66 ± 6	4 of 4	14.03	Up
Larval fat body	10 ± 4	0 of 4	2.10	None
Larval trachea	1 ± 0	0 of 4	0.31	None
Larval carcass	9 ± 4	0 of 4	2.03	None
S2 cells (growing)	5 ± 0	0 of 4	1.15	None
Whole fly	4 ± 1	0 of 4

tenectin (tnc):

Annotation Number : S.C3R002811
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039257
Gbrowse : chr3R:20835082-20836782 (+) // 100.0 //
Probeset : 1628787_s_at
Accessions : protein= NP_651318;, nucleotide= NM_143061;
Pathway : 0031012 // extracellular matrix // inferred from direct assay
Interpro : 0005178 // integrin binding // inferred from direct assay
FlyMine data for FBgn0039257.
VDRC has 1 RNAi stocks for FBgn0039257 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	1 of 4	0.60	None
Head	3 ± 0	0 of 4	0.70	None
Eye	4 ± 1	0 of 4	0.77	None
Thoracicoabdominal ganglion	6 ± 1	1 of 4	1.20	None
Salivary gland	9 ± 0	0 of 4	1.89	Up
Crop	8 ± 0	2 of 4	1.60	Up
Midgut	8 ± 1	2 of 4	1.60	None
Tubule	6 ± 0	1 of 4	1.10	None
Hindgut	6 ± 0	3 of 4	1.20	None
Heart	5 ± 1	3 of 4	1.04	None
Fat body	5 ± 3	2 of 4	1.05	None
Ovary	2 ± 0	0 of 4	0.50	None
Testis	2 ± 0	0 of 4	0.40	None
Male accessory glands	8 ± 3	1 of 4	1.60	None
Virgin spermatheca	3 ± 1	0 of 4	0.59	None
Mated spermatheca	4 ± 1	1 of 4	0.91	None
Adult carcass	11 ± 1	2 of 4	2.30	Up
Larval CNS	3 ± 0	3 of 4	0.76	None
Larval Salivary gland	2 ± 1	0 of 4	0.44	None
Larval midgut	6 ± 0	3 of 4	1.16	None
Larval tubule	5 ± 0	1 of 4	1.10	None
Larval hindgut	5 ± 0	3 of 4	1.00	None
Larval fat body	3 ± 1	1 of 4	0.70	None
Larval trachea	3 ± 3	1 of 4	0.68	None
Larval carcass	6 ± 1	3 of 4	1.21	None
S2 cells (growing)	2 ± 0	1 of 4	0.48	None
Whole fly	5 ± 1	1 of 4

Looking for FBgn0039257. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720