FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039258 through 18771 annotations produced 1 hits

glycosaminoglycan galactosyltransferase I (beta4GalT7):

Annotation Number : CG11780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039258
Gbrowse : chr3R:20848994-20850205 (+) // 100.0 //
Probeset : 1632917_at
Accessions : protein= NP_651319;, nucleotide= NM_143062;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay /// 0016021 // integral to membrane // inferred from sequence o
Interpro : "0008378 // galactosyltransferase activity // inferred from direct assay /// 0008378 // galactosyltransferase activity /
FlyMine data for FBgn0039258.
Homophila reports that CG11780 is a close match (1e-25) to human gene B4GALT1;GGTB2;GT1;GTB (NP_001488), a gene associated with Congenital disorder of glycosylation, type IId, 607091 (3).
VDRC has 3 RNAi stocks for FBgn0039258 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	85 ± 2	4 of 4	0.60	Down
Head	62 ± 2	4 of 4	0.40	Down
Eye	97 ± 4	4 of 4	0.70	Down
Thoracicoabdominal ganglion	99 ± 4	4 of 4	0.70	Down
Salivary gland	44 ± 4	3 of 4	0.32	Down
Crop	101 ± 1	4 of 4	0.70	Down
Midgut	53 ± 2	4 of 4	0.40	Down
Tubule	60 ± 2	4 of 4	0.40	Down
Hindgut	62 ± 3	4 of 4	0.40	Down
Heart	88 ± 5	4 of 4	0.63	Down
Fat body	68 ± 4	4 of 4	0.49	Down
Ovary	283 ± 6	4 of 4	2.00	Up
Testis	199 ± 4	4 of 4	1.40	Up
Male accessory glands	70 ± 2	4 of 4	0.50	Down
Virgin spermatheca	50 ± 1	4 of 4	0.36	Down
Mated spermatheca	53 ± 1	4 of 4	0.38	Down
Adult carcass	62 ± 3	4 of 4	0.40	Down
Larval CNS	211 ± 20	4 of 4	1.51	Up
Larval Salivary gland	113 ± 5	4 of 4	0.81	Down
Larval midgut	47 ± 2	4 of 4	0.34	Down
Larval tubule	66 ± 2	4 of 4	0.50	Down
Larval hindgut	89 ± 4	4 of 4	0.64	Down
Larval fat body	106 ± 6	4 of 4	0.80	Down
Larval trachea	179 ± 16	4 of 4	1.28	Up
Larval carcass	93 ± 4	4 of 4	0.67	Down
S2 cells (growing)	186 ± 2	4 of 4	1.34	Up
Whole fly	139 ± 1	4 of 4

Looking for FBgn0039258. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720