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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039261 through 18771 annotations produced 1 hits



(CG6422):

Annotation Number : CG6422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039261
Gbrowse : chr3R:20859865-20864801 (-) // 100.0 //
Probeset : 1630901_a_at
Accessions : protein= NP_001097905; /// NP_651322; /// NP_733067;, nucleotide= NM_001104435; /// NM_143065; /// NM_170188;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039261.
BDGP gene expression has embryonic in situ data for CG6422: 13 pix of staining in 2 body parts.
Homophila reports that CG6422 is a close match (4e-64) to human gene YTHDF2 (NP_057342), a gene associated with {Longevity, susceptibility to}, 152430 (3).
BioGrid reports that CG6422 interacts with CG7196 .
VDRC has 3 RNAi stocks for FBgn0039261 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain326 ± 114 of 4 1.30Up
Head116 ± 164 of 4 0.50Down
Eye100 ± 34 of 4 0.41Down
Thoracicoabdominal ganglion242 ± 54 of 4 1.00None
Salivary gland237 ± 44 of 4 0.98None
Crop224 ± 114 of 4 0.90None
Midgut187 ± 24 of 4 0.80Down
Tubule253 ± 44 of 4 1.00Up
Hindgut151 ± 54 of 4 0.60Down
Heart88 ± 44 of 4 0.37Down
Fat body109 ± 54 of 4 0.45Down
Ovary656 ± 134 of 4 2.70Up
Testis42 ± 34 of 4 0.20Down
Male accessory glands203 ± 44 of 4 0.80Down
Virgin spermatheca140 ± 44 of 4 0.58Down
Mated spermatheca130 ± 84 of 4 0.54Down
Adult carcass104 ± 64 of 4 0.40Down
Larval CNS722 ± 914 of 4 2.98Up
Larval Salivary gland180 ± 64 of 4 0.74Down
Larval midgut192 ± 124 of 4 0.79Down
Larval tubule237 ± 84 of 4 1.00None
Larval hindgut270 ± 94 of 4 1.11None
Larval fat body118 ± 94 of 4 0.50Down
Larval trachea160 ± 114 of 4 0.66Down
Larval carcass235 ± 144 of 4 0.97None
S2 cells (growing)416 ± 214 of 4 1.72Up
Whole fly242 ± 64 of 4

Looking for FBgn0039261. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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