FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039265 through 18771 annotations produced 1 hits

(CG11790):

Annotation Number : CG11790
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039265
Gbrowse : chr3R:20873421-20875177 (+) // 100.0 //
Probeset : 1641568_a_at
Accessions : protein= NP_651326; /// NP_733071;, nucleotide= NM_143069; /// NM_170192;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039265.
BDGP gene expression has embryonic in situ data for CG11790: 8 pix of staining in 3 body parts.
BioGrid reports that CG11790 interacts with CG3397 CG6733 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	330 ± 17	4 of 4	1.20	None
Head	408 ± 15	4 of 4	1.50	Up
Eye	531 ± 21	4 of 4	1.89	Up
Thoracicoabdominal ganglion	395 ± 12	4 of 4	1.40	Up
Salivary gland	1204 ± 55	4 of 4	4.28	Up
Crop	343 ± 5	4 of 4	1.20	Up
Midgut	240 ± 8	4 of 4	0.90	Down
Tubule	240 ± 10	4 of 4	0.90	Down
Hindgut	344 ± 3	4 of 4	1.20	Up
Heart	376 ± 3	4 of 4	1.34	Up
Fat body	403 ± 47	4 of 4	1.43	Up
Ovary	366 ± 4	4 of 4	1.30	Up
Testis	109 ± 4	4 of 4	0.40	Down
Male accessory glands	1436 ± 44	4 of 4	5.10	Up
Virgin spermatheca	475 ± 28	4 of 4	1.69	Up
Mated spermatheca	546 ± 32	4 of 4	1.94	Up
Adult carcass	327 ± 23	4 of 4	1.20	None
Larval CNS	487 ± 40	4 of 4	1.73	Up
Larval Salivary gland	1105 ± 5	4 of 4	3.93	Up
Larval midgut	225 ± 6	4 of 4	0.80	Down
Larval tubule	172 ± 7	4 of 4	0.60	Down
Larval hindgut	405 ± 14	4 of 4	1.44	Up
Larval fat body	352 ± 34	4 of 4	1.30	None
Larval trachea	966 ± 79	4 of 4	3.44	Up
Larval carcass	686 ± 43	4 of 4	2.44	Up
S2 cells (growing)	1701 ± 33	4 of 4	6.05	Up
Whole fly	281 ± 12	4 of 4

Looking for FBgn0039265. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720