FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039271 through 18771 annotations produced 1 hits

(CG11839):

Annotation Number : CG11839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039271
Gbrowse : chr3R:20895686-20896603 (+) // 100.0 //
Probeset : 1626833_at
Accessions : protein= NP_733077;, nucleotide= NM_170198;
FlyMine data for FBgn0039271.
VDRC has 3 RNAi stocks for FBgn0039271 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	38 ± 1	4 of 4	0.50	Down
Head	30 ± 2	4 of 4	0.40	Down
Eye	46 ± 2	4 of 4	0.63	Down
Thoracicoabdominal ganglion	35 ± 2	4 of 4	0.50	Down
Salivary gland	27 ± 4	1 of 4	0.37	Down
Crop	37 ± 1	4 of 4	0.50	Down
Midgut	27 ± 0	4 of 4	0.40	Down
Tubule	14 ± 2	1 of 4	0.20	Down
Hindgut	32 ± 1	4 of 4	0.40	Down
Heart	28 ± 2	4 of 4	0.38	Down
Fat body	18 ± 2	3 of 4	0.25	Down
Ovary	195 ± 7	4 of 4	2.60	Up
Testis	36 ± 1	4 of 4	0.50	Down
Male accessory glands	29 ± 2	4 of 4	0.40	Down
Virgin spermatheca	20 ± 1	4 of 4	0.28	Down
Mated spermatheca	23 ± 0	2 of 4	0.31	Down
Adult carcass	23 ± 1	3 of 4	0.30	Down
Larval CNS	76 ± 5	4 of 4	1.03	None
Larval Salivary gland	68 ± 3	4 of 4	0.92	None
Larval midgut	25 ± 1	4 of 4	0.35	Down
Larval tubule	31 ± 2	4 of 4	0.40	Down
Larval hindgut	32 ± 4	4 of 4	0.44	Down
Larval fat body	34 ± 3	4 of 4	0.50	Down
Larval trachea	64 ± 5	4 of 4	0.87	None
Larval carcass	31 ± 1	4 of 4	0.43	Down
S2 cells (growing)	40 ± 1	4 of 4	0.55	Down
Whole fly	74 ± 6	4 of 4

Looking for FBgn0039271. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720