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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039272 through 18771 annotations produced 1 hits



(CG11836):

Annotation Number : CG11836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039272
Gbrowse : chr3R:20896852-20898434 (+) // 100.0 //
Probeset : 1623312_s_at
Accessions : protein= NP_001097910; /// NP_001163718; /// NP_651333; /// NP_733078;, nucleotide= NM_001104440; /// NM_001170247; /// NM_143076; /// NM_170199;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0039272.
BDGP gene expression has embryonic in situ data for CG11836: 16 pix of staining in 8 body parts.
Homophila reports that CG11836 is a close match (5e-11) to human gene BF;CFB;GBG (NP_001701), a gene associated with {Macular degeneration, age-related, reduced risk of}, 603075 (3).
TRiP has 1 RNAi stocks for FBgn0039272 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039272 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 0.20Down
Head29 ± 14 of 4 0.20Down
Eye54 ± 54 of 4 0.45Down
Thoracicoabdominal ganglion28 ± 14 of 4 0.20Down
Salivary gland175 ± 44 of 4 1.44Up
Crop42 ± 14 of 4 0.40Down
Midgut70 ± 24 of 4 0.60Down
Tubule76 ± 24 of 4 0.60Down
Hindgut56 ± 14 of 4 0.50Down
Heart34 ± 24 of 4 0.29Down
Fat body39 ± 14 of 4 0.33Down
Ovary305 ± 64 of 4 2.50Up
Testis35 ± 14 of 4 0.30Down
Male accessory glands104 ± 24 of 4 0.90Down
Virgin spermatheca28 ± 34 of 4 0.24Down
Mated spermatheca29 ± 14 of 4 0.24Down
Adult carcass49 ± 64 of 4 0.40Down
Larval CNS18 ± 24 of 4 0.15Down
Larval Salivary gland18 ± 04 of 4 0.15Down
Larval midgut80 ± 04 of 4 0.66Down
Larval tubule67 ± 14 of 4 0.60Down
Larval hindgut108 ± 34 of 4 0.89Down
Larval fat body17 ± 34 of 4 0.10Down
Larval trachea105 ± 104 of 4 0.86Down
Larval carcass112 ± 74 of 4 0.92None
S2 cells (growing)30 ± 24 of 4 0.25Down
Whole fly121 ± 34 of 4

Looking for FBgn0039272. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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