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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039283 through 18771 annotations produced 1 hits



Distal antenna related (danr):

Annotation Number : CG13651
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039283
Gbrowse : chr3R:20963798-20965625 (+) // 100.0 //
Probeset : 1624225_at
Accessions : protein= NP_651343;, nucleotide= NM_143086;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005
FlyMine data for FBgn0039283.
BDGP gene expression has embryonic in situ data for CG13651: 74 pix of staining in 19 body parts.
BioGrid reports that CG13651 interacts with CG14379 CG4617 CG7583 CG1660 CG18292 CG2095 CG30497 CG8938 CG8981 CG9900 Dmel CG33691 .
TRiP has 1 RNAi stocks for FBgn0039283 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039283 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 ± 124 of 421.10Up
Head48 ± 34 of 4 5.30Up
Eye60 ± 44 of 4 6.75Up
Thoracicoabdominal ganglion141 ± 144 of 415.70Up
Salivary gland8 ± 30 of 4 0.90None
Crop2 ± 00 of 4 0.20Down
Midgut9 ± 20 of 4 1.00None
Tubule20 ± 42 of 4 2.30Up
Hindgut2 ± 00 of 4 0.30Down
Heart2 ± 10 of 4 0.27Down
Fat body11 ± 30 of 4 1.30None
Ovary0 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands2 ± 10 of 4 0.30Down
Virgin spermatheca6 ± 00 of 4 0.76None
Mated spermatheca6 ± 00 of 4 0.74None
Adult carcass3 ± 10 of 4 0.40Down
Larval CNS305 ± 314 of 433.95Up
Larval Salivary gland6 ± 10 of 4 0.74None
Larval midgut3 ± 10 of 4 0.39Down
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut3 ± 00 of 4 0.33Down
Larval fat body4 ± 10 of 4 0.50Down
Larval trachea1 ± 10 of 4 0.16Down
Larval carcass3 ± 20 of 4 0.44None
S2 cells (growing)0 ± 00 of 4 0.07Down
Whole fly9 ± 01 of 4

Looking for FBgn0039283. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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