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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039290 through 18771 annotations produced 1 hits



(CG13654):

Annotation Number : CG13654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039290
Gbrowse : chr3R:21036046-21039371 (+) // 100.0 //
Probeset : 1635362_at
Accessions : protein= NP_651350;, nucleotide= NM_143093;
FlyMine data for FBgn0039290.
VDRC has 2 RNAi stocks for FBgn0039290 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 24 of 4 5.90Up
Head37 ± 14 of 4 3.00Up
Eye24 ± 24 of 4 1.96Up
Thoracicoabdominal ganglion75 ± 54 of 4 6.00Up
Salivary gland12 ± 10 of 4 0.99None
Crop5 ± 10 of 4 0.40Down
Midgut32 ± 24 of 4 2.60Up
Tubule8 ± 10 of 4 0.70Down
Hindgut13 ± 13 of 4 1.10None
Heart18 ± 33 of 4 1.49None
Fat body49 ± 64 of 4 3.92Up
Ovary1 ± 00 of 4 0.10Down
Testis4 ± 03 of 4 0.40Down
Male accessory glands10 ± 00 of 4 0.80None
Virgin spermatheca23 ± 24 of 4 1.86Up
Mated spermatheca16 ± 34 of 4 1.33None
Adult carcass27 ± 14 of 4 2.20Up
Larval CNS21 ± 34 of 4 1.67Up
Larval Salivary gland7 ± 10 of 4 0.55Down
Larval midgut30 ± 14 of 4 2.40Up
Larval tubule15 ± 14 of 4 1.20None
Larval hindgut10 ± 14 of 4 0.81None
Larval fat body101 ± 114 of 4 8.00Up
Larval trachea3 ± 20 of 4 0.30Down
Larval carcass7 ± 00 of 4 0.62Down
S2 cells (growing)16 ± 14 of 4 1.33None
Whole fly12 ± 14 of 4

Looking for FBgn0039290. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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