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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039291 through 18771 annotations produced 1 hits



(CG13663):

Annotation Number : CG13663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039291
Gbrowse : chr3R:21040264-21040860 (-) // 100.0 //
Probeset : 1631784_at
Accessions : protein= NP_651351;, nucleotide= NM_143094;
FlyMine data for FBgn0039291.
VDRC has 4 RNAi stocks for FBgn0039291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 34 of 4 0.40Down
Head113 ± 54 of 4 0.80Down
Eye103 ± 14 of 4 0.70Down
Thoracicoabdominal ganglion65 ± 24 of 4 0.40Down
Salivary gland319 ± 134 of 4 2.16Up
Crop177 ± 104 of 4 1.20None
Midgut169 ± 74 of 4 1.20None
Tubule79 ± 44 of 4 0.50Down
Hindgut159 ± 94 of 4 1.10None
Heart218 ± 124 of 4 1.48Up
Fat body178 ± 74 of 4 1.21None
Ovary251 ± 54 of 4 1.70Up
Testis81 ± 34 of 4 0.60Down
Male accessory glands344 ± 234 of 4 2.30Up
Virgin spermatheca122 ± 44 of 4 0.83None
Mated spermatheca154 ± 114 of 4 1.04None
Adult carcass126 ± 44 of 4 0.90None
Larval CNS81 ± 44 of 4 0.55Down
Larval Salivary gland392 ± 94 of 4 2.66Up
Larval midgut195 ± 44 of 4 1.32Up
Larval tubule146 ± 14 of 4 1.00None
Larval hindgut136 ± 64 of 4 0.92None
Larval fat body191 ± 264 of 4 1.30None
Larval trachea184 ± 174 of 4 1.25Up
Larval carcass167 ± 44 of 4 1.13None
S2 cells (growing)137 ± 34 of 4 0.93None
Whole fly147 ± 104 of 4

Looking for FBgn0039291. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime