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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039293 through 18771 annotations produced 1 hits



(CG11851):

Annotation Number : CG11851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039293
Gbrowse : chr3R:21047314-21049843 (+) // 100.0 //
Probeset : 1624152_at
Accessions : protein= NP_651353;, nucleotide= NM_143096;
Pathway : 0031227 // intrinsic to endoplasmic reticulum membrane // inferred from electronic annotation
Interpro : "0000030 // mannosyltransferase activity // inferred from sequence or structural similarity /// 0016740 // transferase a
FlyMine data for FBgn0039293.
BDGP gene expression has embryonic in situ data for CG11851: 4 pix of staining in 1 body parts.
Homophila reports that CG11851 is a close match (1e-88) to human gene ALG9;DIBD1 (NP_001071160), a gene associated with Congenital disorder of glycosylation, type Il, 608776 (3).
VDRC has 2 RNAi stocks for FBgn0039293 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 ± 54 of 4 0.50Down
Head128 ± 84 of 4 0.60Down
Eye108 ± 64 of 4 0.47Down
Thoracicoabdominal ganglion136 ± 44 of 4 0.60Down
Salivary gland183 ± 54 of 4 0.80Down
Crop96 ± 14 of 4 0.40Down
Midgut193 ± 54 of 4 0.80Down
Tubule87 ± 34 of 4 0.40Down
Hindgut110 ± 44 of 4 0.50Down
Heart114 ± 64 of 4 0.50Down
Fat body170 ± 164 of 4 0.74Down
Ovary476 ± 64 of 4 2.10Up
Testis50 ± 34 of 4 0.20Down
Male accessory glands286 ± 64 of 4 1.20Up
Virgin spermatheca149 ± 34 of 4 0.65Down
Mated spermatheca176 ± 74 of 4 0.77Down
Adult carcass106 ± 54 of 4 0.50Down
Larval CNS485 ± 364 of 4 2.11Up
Larval Salivary gland538 ± 304 of 4 2.34Up
Larval midgut233 ± 144 of 4 1.01None
Larval tubule135 ± 44 of 4 0.60Down
Larval hindgut199 ± 124 of 4 0.87None
Larval fat body205 ± 234 of 4 0.90None
Larval trachea256 ± 314 of 4 1.12None
Larval carcass181 ± 64 of 4 0.79Down
S2 cells (growing)567 ± 164 of 4 2.47Up
Whole fly230 ± 84 of 4

Looking for FBgn0039293. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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