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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039296 through 18771 annotations produced 1 hits



(CG10420):

Annotation Number : CG10420
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039296
Gbrowse : chr3R:21059355-21061240 (-) // 100.0 //
Probeset : 1623247_at
Accessions : protein= NP_651356;, nucleotide= NM_143099;
Pathway : translocation // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic a
Interpro : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred
FlyMine data for FBgn0039296.
BDGP gene expression has embryonic in situ data for CG10420: 4 pix of staining in 1 body parts.
Homophila reports that CG10420 is a close match (5e-30) to human gene BAP;MSS;SIL1 (NP_071909), a gene associated with Marinesco-Sjogren syndrome, 248800 (3).
TRiP has 1 RNAi stocks for FBgn0039296 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 ± 34 of 4 1.60Up
Head71 ± 64 of 4 1.00None
Eye39 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion143 ± 24 of 4 1.90Up
Salivary gland82 ± 44 of 4 1.10None
Crop42 ± 34 of 4 0.60Down
Midgut45 ± 24 of 4 0.60Down
Tubule13 ± 32 of 4 0.20Down
Hindgut24 ± 24 of 4 0.30Down
Heart43 ± 34 of 4 0.58Down
Fat body58 ± 54 of 4 0.77Down
Ovary157 ± 64 of 4 2.10Up
Testis36 ± 34 of 4 0.50Down
Male accessory glands215 ± 214 of 4 2.90Up
Virgin spermatheca24 ± 34 of 4 0.32Down
Mated spermatheca35 ± 64 of 4 0.47Down
Adult carcass36 ± 34 of 4 0.50Down
Larval CNS50 ± 54 of 4 0.67Down
Larval Salivary gland191 ± 154 of 4 2.54Up
Larval midgut32 ± 34 of 4 0.42Down
Larval tubule34 ± 24 of 4 0.50Down
Larval hindgut51 ± 34 of 4 0.68Down
Larval fat body83 ± 184 of 4 1.10None
Larval trachea54 ± 54 of 4 0.73Down
Larval carcass52 ± 24 of 4 0.70Down
S2 cells (growing)303 ± 164 of 4 4.03Up
Whole fly75 ± 34 of 4

Looking for FBgn0039296. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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