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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039297 through 18771 annotations produced 1 hits


Annotation Number : CG11852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039297
Gbrowse : chr3R:21063346-21064617 (+) // 100.0 //
Probeset : 1637900_at
Accessions : protein= NP_651357;, nucleotide= NM_143100;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039297.
BDGP gene expression has embryonic in situ data for CG11852: 4 pix of staining in 1 body parts.
BioGrid reports that CG11852 interacts with CG8508 .
VDRC has 3 RNAi stocks for FBgn0039297 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 12 of 4 0.20Down
Head56 44 of 4 1.40None
Eye53 184 of 4 1.35None
Thoracicoabdominal ganglion6 14 of 4 0.20Down
Salivary gland95 104 of 4 2.37Up
Crop343 484 of 4 8.60Up
Midgut143 84 of 4 3.60Up
Tubule135 144 of 4 3.40Up
Hindgut346 114 of 4 8.70Up
Heart103 84 of 4 2.58Up
Fat body148 194 of 4 3.71Up
Ovary8 12 of 4 0.20Down
Testis35 34 of 4 0.90None
Male accessory glands100 64 of 4 2.50Up
Virgin spermatheca106 44 of 4 2.67Up
Mated spermatheca150 64 of 4 3.75Up
Adult carcass150 44 of 4 3.80Up
Larval CNS110 434 of 4 2.75Up
Larval Salivary gland15 33 of 4 0.39Down
Larval midgut387 384 of 4 9.67Up
Larval tubule48 34 of 4 1.20None
Larval hindgut2715 1324 of 467.77Up
Larval fat body14 22 of 4 0.40Down
Larval trachea4086 6284 of 4101.98Up
Larval carcass747 144 of 418.66Up
S2 cells (growing)3 00 of 4 0.08Down
Whole fly40 54 of 4

Looking for FBgn0039297. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime