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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039309 through 18771 annotations produced 1 hits



/// (CG11889 /// CG11891):

Annotation Number : CG33091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039308 /// FBgn0039309
Gbrowse : chr3R:21095952-21098989 (+) // 100.0 //
Probeset : 1630429_s_at
Accessions : protein= NP_001027211; /// NP_651367; /// NP_651368;, nucleotide= NM_001032040; /// NM_143110; /// NM_143111;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039308 /// FBgn0039309.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 ± 34 of 4 2.40Up
Head163 ± 114 of 4 2.50Up
Eye13 ± 33 of 4 0.22Down
Thoracicoabdominal ganglion183 ± 44 of 4 2.80Up
Salivary gland11 ± 40 of 4 0.18Down
Crop1 ± 00 of 4 0.00Down
Midgut759 ± 694 of 411.80Up
Tubule1352 ± 364 of 421.00Up
Hindgut213 ± 154 of 4 3.30Up
Heart3 ± 00 of 4 0.05Down
Fat body8 ± 81 of 4 0.13Down
Ovary1 ± 00 of 4 0.00Down
Testis37 ± 44 of 4 0.60Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca12 ± 42 of 4 0.19Down
Mated spermatheca5 ± 10 of 4 0.08Down
Adult carcass77 ± 134 of 4 1.20None
Larval CNS2 ± 11 of 4 0.04Down
Larval Salivary gland3 ± 11 of 4 0.06Down
Larval midgut4 ± 11 of 4 0.08Down
Larval tubule699 ± 644 of 410.80Up
Larval hindgut15 ± 24 of 4 0.25Down
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea3 ± 20 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 10 of 4 0.03Down
Whole fly64 ± 74 of 4

Looking for FBgn0039309. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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